CuGenDBv2

Gene ID	CmoCh11G008140
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L30
Genome location	Cmo_Chr11:4041204..4042913
RNA-Seq Expression	CmoCh11G008140
Synteny	CmoCh11G008140
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008451087.1 PREDICTED: 60S ribosomal protein L30 [Cucumis melo]

3.5e-48

97.06

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

XP_011660089.1 60S ribosomal protein L30 [Cucumis sativus]

1.6e-48

98.04

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

XP_022157366.1 60S ribosomal protein L30 [Momordica charantia]

3.5e-48

97.06

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

XP_022925483.1 60S ribosomal protein L30 [Cucurbita moschata]

1.6e-48

98.04

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

3.5e-48

97.06

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXA9 Ribosomal_L7Ae domain-containing protein

7.6e-49

98.04

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

A0A5D3CI16 60S ribosomal protein L30

1.7e-48

97.06

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

A0A6J1EFB5 60S ribosomal protein L30

7.6e-49

98.04

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

A0A6J1HXQ4 60S ribosomal protein L30

7.6e-49

98.04

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

A0A6J1JJ11 60S ribosomal protein L30-like

1.7e-48

97.06

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

SwissProt top hits

e value

%identity

Alignment

O49884 60S ribosomal protein L30

1.7e-50

95.1

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

Q8VZ19 60S ribosomal protein L30-2

9.2e-44

82.35

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

Q9C8F7 Putative 60S ribosomal protein L30-1

1.9e-44

84.31

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

Q9M5M6 60S ribosomal protein L30

1.8e-47

82.46

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LRS+KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID  
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HSRRQLVCNFLSDH
         S   ++ +   DH
Subjt:  HSRRQLVCNFLSDH

Q9SDG6 60S ribosomal protein L30

1.6e-43

82.35

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLR+SK KL+II+NNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.3e-45

84.31

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

6.5e-45

82.35

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.9e-44

82.35

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DP 
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPE

Query:  HS
         S
Subjt:  HS

Sequences

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CDS sequence

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ATGGTTGCCGCGAAGAAGACCAAGAAGACTCATGAGAGTATCAACAATAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCGTTCTCAAGAC
CTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGTCCTCCACTCCGAAAGTCTGAGATTGAGTATTATGCGATGTTGGCCAAGGTTGGAGTTCACCATT
ACAACGGAAGCAATGTAGATCTTGGAACTGCGTGCGGAAAGTATTACAGAGTATGCTGCCTCAGTATTATCGATCCTGAGCATTCCCGGAGACAGTTAGTTTGCAACTTC
CTCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTCAATCCATTTAATTTTGGGGGTGAACGTAGTGATGTGTTCCGCTTGCGAAGCATGTTATTATCGATCGAATG
GTTTCAATATAAACTTTTTATGTATGCCAGATCTTATTCCAGAATACTTGTTATATTATCTTGA

mRNA sequence

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AATATCATTTAATGAAAAAGAAAAAAGGAAAAACAGTTGGGCGCTCTATATATATTCTTAGATTAGGGTTTCTGGTTGTAACCCTTTCGGCGTCGATCGGCAGCTTTCTC
TACTTCCACCATGGTTGCCGCGAAGAAGACCAAGAAGACTCATGAGAGTATCAACAATAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCG
TTCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGTCCTCCACTCCGAAAGTCTGAGATTGAGTATTATGCGATGTTGGCCAAGGTTGGA
GTTCACCATTACAACGGAAGCAATGTAGATCTTGGAACTGCGTGCGGAAAGTATTACAGAGTATGCTGCCTCAGTATTATCGATCCTGAGCATTCCCGGAGACAGTTAGT
TTGCAACTTCCTCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTCAATCCATTTAATTTTGGGGGTGAACGTAGTGATGTGTTCCGCTTGCGAAGCATGTTATTAT
CGATCGAATGGTTTCAATATAAACTTTTTATGTATGCCAGATCTTATTCCAGAATACTTGTTATATTATCTTGA

Protein sequence

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MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPEHSRRQLVCNF
LSDHRFLFQSFFFNPFNFGGERSDVFRLRSMLLSIEWFQYKLFMYARSYSRILVILS

CmoCh11G008140 (gene) of Cucurbita moschata (Rifu) v1 genome