CuGenDBv2

Gene ID	CmoCh11G008880
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
Genome location	Cmo_Chr11:4550550..4551161
RNA-Seq Expression	CmoCh11G008880
Synteny	CmoCh11G008880
Gene Ontology terms	NA
InterPro domains	IPR025322 - Protein of unknown function DUF4228, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588215.1 hypothetical protein SDJN03_16780, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-108

99.01

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGNSLSPCLHAISTTSRR SSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
        ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEG GGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
Subjt:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ

Query:  KEG
        KEG
Subjt:  KEG

KAG7022114.1 hypothetical protein SDJN02_15843, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.7e-108

98.03

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGNSLSPCLHAISTT R  SSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
        ASIGA NAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
Subjt:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ

Query:  KEG
        KEG
Subjt:  KEG

XP_022927424.1 uncharacterized protein LOC111434251 [Cucurbita moschata]

1.0e-110

100

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
        ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
Subjt:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ

Query:  KEG
        KEG
Subjt:  KEG

XP_023530355.1 uncharacterized protein LOC111792953 [Cucurbita pepo subsp. pepo]

2.1e-108

97.54

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGNSLSPCLHAISTT RR SSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQL+AGETYFV+PIDLFASFDVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
        ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGE GGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
Subjt:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ

Query:  KEG
        KEG
Subjt:  KEG

XP_038880154.1 uncharacterized protein LOC120071833 [Benincasa hispida]

1.1e-85

75.83

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGN+ SPC  +IS + RR +SAV LIFSNG T+ L GNHH+AGEIMFQFPDMM+CHA+SFFIGHPIPSLAI+D+LL GETY VLPID FAS DVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGNA---KFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA-----GEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCK
        A I AGNA   KFSG  PFEY+RGTNGR++IK++PEF+VRLIS AA     G+GGGG FLCSTPEL+KHYDQLVG++KGQVWSPKLE+ISEYKIRYSPC+
Subjt:  ASIGAGNA---KFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA-----GEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCK

Query:  FVGFKVKQKEG
        FVGFK+KQKEG
Subjt:  FVGFKVKQKEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LZV5 Uncharacterized protein

1.4e-84

74.53

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Query:  MGNSLSPCLHAIS-TTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSS
        MGN++SPCL +IS +   R  S V L+F+NG TK L G+HH AGEIMFQFPDMM+CHA+SFFIGHPIPSL+IDDQL+AGETY +LPID FAS DVLSTSS
Subjt:  MGNSLSPCLHAIS-TTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSS

Query:  LASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA-----GEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPC
        LA+IGAGN    KFSG  PFEY+RGTNG+++IK++PEF+VRLIS AA      EGGGG FLCSTPEL+KHYDQLVGSTKGQVWSPKLE+ISEYKIRYSPC
Subjt:  LASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA-----GEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPC

Query:  KFVGFKVKQKEG
        +FVGFK+KQKEG
Subjt:  KFVGFKVKQKEG

A0A1S3BP11 uncharacterized protein LOC103491983

1.6e-85

76.89

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Query:  MGNSLSPCLHAISTTSRR-SSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSS
        MGN++SPCL +IS + RR   SAV L+F++G TK L GNHH AGEIMFQFPDMM+CHA+SFFIGHPIPSL+IDD+LL GETY VLPID FAS DVLSTSS
Subjt:  MGNSLSPCLHAISTTSRR-SSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSS

Query:  LASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA---GE--GGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPC
        LA IGAGN    KFSG  PFEY+RGTNGR++IK++PEF+VRLISPAA   GE  GGGG FLCSTPEL+KHYDQLVGSTKGQVWSPKLE+ISEYKIRYSPC
Subjt:  LASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA---GE--GGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPC

Query:  KFVGFKVKQKEG
        +FVGFK+KQKEG
Subjt:  KFVGFKVKQKEG

A0A5A7UN34 DUF4228 domain protein

1.6e-85

76.89

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Query:  MGNSLSPCLHAISTTSRR-SSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSS
        MGN++SPCL +IS + RR   SAV L+F++G TK L GNHH AGEIMFQFPDMM+CHA+SFFIGHPIPSL+IDD+LL GETY VLPID FAS DVLSTSS
Subjt:  MGNSLSPCLHAISTTSRR-SSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSS

Query:  LASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA---GE--GGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPC
        LA IGAGN    KFSG  PFEY+RGTNGR++IK++PEF+VRLISPAA   GE  GGGG FLCSTPEL+KHYDQLVGSTKGQVWSPKLE+ISEYKIRYSPC
Subjt:  LASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAA---GE--GGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPC

Query:  KFVGFKVKQKEG
        +FVGFK+KQKEG
Subjt:  KFVGFKVKQKEG

A0A6J1EHY7 uncharacterized protein LOC111434251

4.9e-111

100

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
        ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ
Subjt:  ASIGAGNAKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQ

Query:  KEG
        KEG
Subjt:  KEG

A0A6J1HB88 uncharacterized protein LOC111461744

1.6e-80

72.95

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL
        MGN++SPCL   S T+R  SSAV LIFS+G T+ L G+HH AGEIMFQFPDM++CHADSFFIGH IPSLAI+D+LLAGETY VLPID F+  DVLSTSSL
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSL

Query:  ASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGG-GGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGF
        A+IGAGN    KFS   PFEY+RG NG+ +IK++PEF+VRL+SP    GG GG FLCSTPEL+KHYDQLVG++KGQVWSP LE+ISEYKIRYSPC+FVGF
Subjt:  ASIGAGN---AKFSGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGG-GGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGF

Query:  KVKQKEG
        KVKQKEG
Subjt:  KVKQKEG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G28190.1 unknown protein

4.7e-13

31.9

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Query:  IAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLF---ASFDVLSTSSLASIGAGNAKFSGQSPFEYI--RGTNG-RIVIKIVPEF
        +  E+   FP   IC +D  +IG   P L+  + L  G  YF+LP D F    SF  ++T      G    K + Q P  ++  +G  G R+ I++  EF
Subjt:  IAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLF---ASFDVLSTSSLASIGAGNAKFSGQSPFEYI--RGTNG-RIVIKIVPEF

Query:  LVRLI------------SPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYK
        +  L+                G G G   +C+T +L+K Y QLVG  +   W PKLE+I+E K
Subjt:  LVRLI------------SPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYK

AT5G12340.1 unknown protein

1.3e-42

44.84

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Query:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGV-TKSLTG-NHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTS
        MG SL   +++     RR    V L+F   V TK+L G   H+AGEIMF+FPD ++CHADSF+IG  IP+LA+DD L+ G+TYFVLPI+ F  + +L+TS
Subjt:  MGNSLSPCLHAISTTSRRSSSAVNLIFSNGV-TKSLTG-NHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTS

Query:  SLASIGAG--NAKF----------SGQSPFEYIRGTNGRIVIKIVPEFLVRLI-------SPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLE
         L+   +   N +           S   PFEY +G NG+I+IK+ PEF++ LI          A   G  + +C++PEL+K YDQLVG T+  +WSP L+
Subjt:  SLASIGAG--NAKF----------SGQSPFEYIRGTNGRIVIKIVPEFLVRLI-------SPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLE

Query:  SISEYKIRYSPCKFVGFKVKQKE
        +ISE+KIR SP +F G   KQ E
Subjt:  SISEYKIRYSPCKFVGFKVKQKE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAATTCTCTCTCTCCATGTCTTCATGCCATTTCCACCACCAGCCGCCGCAGCTCCTCCGCCGTCAATCTCATCTTCTCCAACGGCGTCACAAAATCCCTCACCGG
AAACCACCACATCGCCGGCGAGATCATGTTCCAATTCCCGGACATGATGATATGCCACGCTGATTCCTTCTTCATCGGCCACCCGATTCCCTCCTTAGCCATCGACGACC
AACTCCTTGCGGGTGAAACCTATTTCGTTCTCCCGATTGACTTATTCGCTTCCTTCGACGTTCTATCAACGTCGTCGCTCGCATCAATTGGAGCGGGAAATGCTAAATTC
TCCGGTCAAAGTCCATTTGAATACATTCGAGGCACGAATGGAAGAATTGTCATTAAGATCGTACCGGAGTTTCTTGTTCGGCTTATTTCTCCCGCAGCGGGTGAGGGCGG
CGGAGGTAATTTTCTTTGTAGCACGCCGGAGTTGCAGAAGCATTACGATCAGCTCGTCGGGTCGACGAAAGGGCAAGTTTGGTCGCCGAAGTTGGAGAGTATTTCTGAGT
ATAAAATTAGGTATTCGCCTTGTAAATTTGTAGGGTTTAAAGTCAAACAAAAAGAAGGGTAA

mRNA sequence

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Protein sequence

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MGNSLSPCLHAISTTSRRSSSAVNLIFSNGVTKSLTGNHHIAGEIMFQFPDMMICHADSFFIGHPIPSLAIDDQLLAGETYFVLPIDLFASFDVLSTSSLASIGAGNAKF
SGQSPFEYIRGTNGRIVIKIVPEFLVRLISPAAGEGGGGNFLCSTPELQKHYDQLVGSTKGQVWSPKLESISEYKIRYSPCKFVGFKVKQKEG

CmoCh11G008880 (gene) of Cucurbita moschata (Rifu) v1 genome