; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G008930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G008930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationCmo_Chr11:4577275..4578948
RNA-Seq ExpressionCmoCh11G008930
SyntenyCmoCh11G008930
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588219.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-16597.79Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR---GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVG
        MWPS+SSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR   GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVG
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR---GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVG

Query:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS
        TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS
Subjt:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS

Query:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA
        AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA
Subjt:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA

Query:  GRGGGLAGSSGYGNPIN
        GRGGGLAG SGYGNPIN
Subjt:  GRGGGLAGSSGYGNPIN

XP_022933450.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]3.9e-170100Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM

Query:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
        SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
Subjt:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG

Query:  GLAGSSGYGNPIN
        GLAGSSGYGNPIN
Subjt:  GLAGSSGYGNPIN

XP_022933451.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita moschata]8.2e-16899.36Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS  DM
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM

Query:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
        SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
Subjt:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG

Query:  GLAGSSGYGNPIN
        GLAGSSGYGNPIN
Subjt:  GLAGSSGYGNPIN

XP_022974160.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]1.6e-16697.78Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTG+APSSVGIEETNLMISR  GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA

Query:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
        DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
Subjt:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR

Query:  GGGLAGSSGYGNPIN
        GGGLAG SGYGNPIN
Subjt:  GGGLAGSSGYGNPIN

XP_023531847.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo]3.5e-16697.78Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR  GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA

Query:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
        DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
Subjt:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR

Query:  GGGLAGSSGYGNPIN
        GGGLAG SGYGNPI+
Subjt:  GGGLAGSSGYGNPIN

TrEMBL top hitse value%identityAlignment
A0A5A7UJ85 Protein LATERAL ROOT PRIMORDIUM 12.0e-13583.76Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWP   S+RP+   Y HT  P  DMVGLMASG+GVG+SVLPLLTGLAPSSVGIEE NLMISRGG G  GGGG+QF+GNN DGFG LGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
        DCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAADM
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM

Query:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGT-GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
        S K+AKKLPEQ+RAPAVFKCVRVTAVEGG + GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDPSDVYGSSA RG
Subjt:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGT-GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG

Query:  GGLAGSSGYGNPIN
        GGLAG SGYGN IN
Subjt:  GGLAGSSGYGNPIN

A0A6J1EZ30 protein LATERAL ROOT PRIMORDIUM 1-like isoform X24.0e-16899.36Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS  DM
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM

Query:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
        SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
Subjt:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG

Query:  GLAGSSGYGNPIN
        GLAGSSGYGNPIN
Subjt:  GLAGSSGYGNPIN

A0A6J1F4X3 protein LATERAL ROOT PRIMORDIUM 1-like isoform X11.9e-170100Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADM

Query:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
        SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG
Subjt:  SYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGG

Query:  GLAGSSGYGNPIN
        GLAGSSGYGNPIN
Subjt:  GLAGSSGYGNPIN

A0A6J1ID91 protein LATERAL ROOT PRIMORDIUM 1-like isoform X17.5e-16797.78Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTG+APSSVGIEETNLMISR  GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA

Query:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
        DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
Subjt:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR

Query:  GGGLAGSSGYGNPIN
        GGGLAG SGYGNPIN
Subjt:  GGGLAGSSGYGNPIN

A0A6J1IFF1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X21.6e-16497.14Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTG+APSSVGIEETNLMISR  GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISR--GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS  
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAA

Query:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
        DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR
Subjt:  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGR

Query:  GGGLAGSSGYGNPIN
        GGGLAG SGYGNPIN
Subjt:  GGGLAGSSGYGNPIN

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 26.8e-3243.12Show/hide
Query:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKK--PRLIASQTTTNSHTSTSNTPTRSFDTC
        +C DCGNQAKKDC H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +   GG+ SG   GG    P+     T   + +S+S  P+ S    
Subjt:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKK--PRLIASQTTTNSHTSTSNTPTRSFDTC

Query:  SAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSS
          A +    A   P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+          ++ GG  G          SD   SS
Subjt:  SAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSS

Query:  AGRGGGLAGSSGYGNPIN
        AG GGG       G+P N
Subjt:  AGRGGGLAGSSGYGNPIN

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.6e-5751.56Show/hide
Query:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
        A+   +G+ V+PLLT   P    +E++++     +R           Q   F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK

Query:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA
        SRGFDC+THVKSTWV AARRRERQV+     A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+        +  P QVRA A
Subjt:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA

Query:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG
        VFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG

Q9LQZ5 Protein SHI RELATED SEQUENCE 51.3e-2743.72Show/hide
Query:  GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH-----
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER    A  A+      SS  T   K+ R  +     +       
Subjt:  GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH-----

Query:  --TSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE
          ++ +NT   + ++ S  ++S    + LP +V +PA+F+CVRV+++E        YAYQ  V IGGH+FKG LYD G E ++
Subjt:  --TSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE

Q9SD40 Protein SHI RELATED SEQUENCE 12.5e-2634.97Show/hide
Query:  ASGYGVGLS---VLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDC
        A+G GVG S      +    + +  G     +MI  GG GGG GG                          +C DCGNQAKKDC+H RCR+CCKSRGF+C
Subjt:  ASGYGVGLS---VLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDC

Query:  ATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAV
        +THV+STWVPAA+RRERQ   A                   + +L   ++    H       + S         S       P +V + AVF+CVRV++V
Subjt:  ATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAV

Query:  EGGGTGGNEYAYQAVVKIGGHVFKGYLYD--HGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDV----YGSSAGRGGGLAGSS
        E    G  E+AYQ  V IGGH+FKG LYD   G     G+ +++      GG GG+    +I    V      SS    GG+  SS
Subjt:  EGGGTGGNEYAYQAVVKIGGHVFKGYLYD--HGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDV----YGSSAGRGGGLAGSS

Q9XGX0 Protein SHORT INTERNODES1.5e-2637.45Show/hide
Query:  GLAPSSVGIEETN---LMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRR
        G+ PS+  + ET+   LM+ R G G GG                            +C DCGNQ+KKDC+H RCR+CCKSRG DC THVKSTWVPAA+RR
Subjt:  GLAPSSVGIEETN---LMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRR

Query:  ER-QVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQA
        ER Q LS        GG+        ++   I +++T+ ++T   +  T   +               P +V + AVF+CVRV++V+       EYAY+ 
Subjt:  ER-QVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQA

Query:  VVKIGGHVFKGYLYDHGVEAREGFPMLSD-LHLGGGGDGGSTSSPIIDPSD-VYGSSAGRGGGLAGSSGYGNPIN
         V IGGHVFKG LYD G   R      S  L+L   G   S+SSP +  ++ V GS++      A S  Y  PIN
Subjt:  VVKIGGHVFKGYLYDHGVEAREGFPMLSD-LHLGGGGDGGSTSSPIIDPSD-VYGSSAGRGGGLAGSSGYGNPIN

Arabidopsis top hitse value%identityAlignment
AT1G75520.1 SHI-related sequence 59.4e-2943.72Show/hide
Query:  GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH-----
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER    A  A+      SS  T   K+ R  +     +       
Subjt:  GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH-----

Query:  --TSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE
          ++ +NT   + ++ S  ++S    + LP +V +PA+F+CVRV+++E        YAYQ  V IGGH+FKG LYD G E ++
Subjt:  --TSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE

AT4G36260.1 Lateral root primordium (LRP) protein-related4.8e-3343.12Show/hide
Query:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKK--PRLIASQTTTNSHTSTSNTPTRSFDTC
        +C DCGNQAKKDC H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +   GG+ SG   GG    P+     T   + +S+S  P+ S    
Subjt:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKK--PRLIASQTTTNSHTSTSNTPTRSFDTC

Query:  SAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSS
          A +    A   P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+          ++ GG  G          SD   SS
Subjt:  SAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSS

Query:  AGRGGGLAGSSGYGNPIN
        AG GGG       G+P N
Subjt:  AGRGGGLAGSSGYGNPIN

AT5G12330.1 Lateral root primordium (LRP) protein-related1.1e-5851.56Show/hide
Query:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
        A+   +G+ V+PLLT   P    +E++++     +R           Q   F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK

Query:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA
        SRGFDC+THVKSTWV AARRRERQV+     A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+        +  P QVRA A
Subjt:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA

Query:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG
        VFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG

AT5G12330.2 Lateral root primordium (LRP) protein-related1.1e-5851.56Show/hide
Query:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
        A+   +G+ V+PLLT   P    +E++++     +R           Q   F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK

Query:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA
        SRGFDC+THVKSTWV AARRRERQV+     A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+        +  P QVRA A
Subjt:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA

Query:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG
        VFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG

AT5G12330.4 Lateral root primordium (LRP) protein-related1.1e-5851.56Show/hide
Query:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
        A+   +G+ V+PLLT   P    +E++++     +R           Q   F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGYGVGLSVLPLLTGLAPSSVGIEETNLMI---SRGGDGGGGGGGVQ---FHGNNFDGFGFL---GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK

Query:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA
        SRGFDC+THVKSTWV AARRRERQV+     A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+        +  P QVRA A
Subjt:  SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA

Query:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG
        VFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCT
TAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAGTGTCGGAATTGAAGAGACTAATTTGATGATCAGCCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTC
AATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGC
AACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGAACGCCAAGTACTGAG
CGCCGCCGCCGCCGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCA
CTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGC
GTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGG
AGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAA
GCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA
mRNA sequenceShow/hide mRNA sequence
CATCTCTCAATCCAAAATTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTCTAGCTTTTTAGCTACAAACATTCATATATTTCTGCTTAGAATCTATGTTT
CTGTCAGTTCCTCAGTATCCAACATCCTCTTAGATCGTTTTAAGATCTTAATTTTAGATTAGGAGAGGTTTTTGCTTACAATTAGGGTTTTTTTTTTCTCGCCGGAGATT
CATCAGCTGTGGCTGCCGCACGCCGCCTTCCTTCCGATTCCGGTGCCTTTGCCGATTGGGTGGCTCCTCCCACCGCCGATGATGAACTTTCTCTCGGTTTCAATTCTGCT
GCTGCCGTACCGGTTGCTAGGATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGC
CTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAGTGTCGGAATTGAAGAGACTAATTTGATGATCAGCCGCGGCGGCGATGGCG
GCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGG
AACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGGCG
GAGAGAACGCCAAGTACTGAGCGCCGCCGCCGCCGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAA
CCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTGCCGGAACAAGTAAGA
GCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAA
AGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCG
ACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGAGTTACTTTTGTGTTTGTTGAGTTAGTT
GGATCCATATTTAAACATGTTGGATGTTTTGTTTTAGCATTTGAATTTGTTTAGTGGGGAAATAAGAGATAGGAGC
Protein sequenceShow/hide protein sequence
MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDC
NHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKC
VRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN