CuGenDBv2

Gene ID	CmoCh11G009570
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Isopentenyl-diphosphate Delta-isomerase
Genome location	Cmo_Chr11:5038027..5044395
RNA-Seq Expression	CmoCh11G009570
Synteny	CmoCh11G009570
Gene Ontology terms	GO:0009240 - isopentenyl diphosphate biosynthetic process (biological process) GO:0015995 - chlorophyll biosynthetic process (biological process) GO:0050992 - dimethylallyl diphosphate biosynthetic process (biological process) GO:0005737 - cytoplasm (cellular component) GO:0004452 - isopentenyl-diphosphate delta-isomerase activity (molecular function)
InterPro domains	IPR000086 - NUDIX hydrolase domain IPR015797 - NUDIX hydrolase-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588276.1 Isopentenyl-diphosphate Delta-isomerase I, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-39

83.84

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

KAG7022195.1 Isopentenyl-diphosphate Delta-isomerase I [Cucurbita argyrosperma subsp. argyrosperma]

3.1e-39

95.24

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Query:  LSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        L ++QRSAKKVTFPLAWTDSCCSHPLYKESDL+EEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  LSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

XP_022933731.1 isopentenyl-diphosphate Delta-isomerase I-like [Cucurbita moschata]

2.3e-39

83.84

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

XP_023005703.1 isopentenyl-diphosphate Delta-isomerase I isoform X1 [Cucurbita maxima]

2.3e-39

83.84

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

XP_023520678.1 isopentenyl-diphosphate Delta-isomerase I-like isoform X2 [Cucurbita pepo subsp. pepo]

2.3e-39

83.84

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

TrEMBL top hits

e value

%identity

Alignment

A0A2D0UJT0 Isopentenyl-diphosphate Delta-isomerase (Fragment)

7.1e-34

71.72

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N  N +L ++QRSA KVTFPL WT++CCSHPLY+ES+LIEE+ALGAR AAQRKLL ELGIPAED+PVDQ IP+GRMLYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

A0A5A7T9F7 Isopentenyl-diphosphate Delta-isomerase

1.6e-33

71.72

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSA KVTFPL WT++CCSHPLY+ES+LIEEDALGAR AAQRKLL ELGIPAED+PVDQ IP+GRMLYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

A0A5D3E439 Isopentenyl-diphosphate Delta-isomerase

1.3e-35

79.12

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Query:  INMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        +N ++S+L +KQRSA KVTFPL WT++CCSHPLY+ES+LIEEDALGAR AAQRKLL ELGIPAED+PVDQ IP+GRMLYKAPSD KWGEHE
Subjt:  INMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

A0A6J1EZV5 Isopentenyl-diphosphate Delta-isomerase

1.1e-39

83.84

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

A0A6J1L2X3 Isopentenyl-diphosphate Delta-isomerase

1.1e-39

83.84

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

SwissProt top hits

e value

%identity

Alignment

O48964 Isopentenyl-diphosphate Delta-isomerase I

1.4e-34

68.69

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSA KVTFPL WT++CCSHPLY+ES+LI+E+ALGAR AAQRKLL ELGIPAED+PVDQ IP+GR+LYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

O48965 Isopentenyl-diphosphate Delta-isomerase II

6.9e-34

66.67

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSA KVTFPL WT++CCSHP Y+ES+L++E+ALG R AAQRKLL ELGIPAED+PVDQ IP+GRMLYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

Q39471 Isopentenyl-diphosphate Delta-isomerase II

2.9e-32

64.65

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSA KVTFPL WT++CCSHPLY+ES+LI+E+ LG R AAQRKLL ELGIPAED+PVD+  P+ RMLYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

Q39472 Isopentenyl-diphosphate Delta-isomerase I

5.8e-33

65.66

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRSA KVTFPL WT++CCSHPLY+ES+LI+E+ LG R AAQRKLL ELGIPAED+PVDQ IP+ R+LYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

Q39664 Isopentenyl-diphosphate Delta-isomerase II

9.9e-33

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Query:  LSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        L ++QRSA KVTFPL WT++CCSHPLY+ES+LI+E+ LG R AAQRKLL ELGIPAED+PVD+  PV RMLYKAPSD KWGEHE
Subjt:  LSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

Arabidopsis top hits

e value

%identity

Alignment

AT3G02780.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2

7.8e-33

63.64

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRS  KVTFPL WT++CCSHPLY+ES+LI+++ALG R AAQRKLL ELGI AED+PVD+  P+GRMLYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

AT5G16440.1 isopentenyl diphosphate isomerase 1

1.0e-32

63.64

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Query:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE
        H  + + + N    +L ++QRS  KVTFPL WT++CCSHPLY+ES+LIEE+ LG R AAQRKL  ELGI AED+PVD+  P+GRMLYKAPSD KWGEHE
Subjt:  HGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAACTATTGTTTTCATGGCATCTATGGTTTGGTTGTCATTAACATGGTTAATTCTATGTTATCTATGAAGCAACGATCTGCTAAAAAGGTGACGTTTCCGCTTGCGTG
GACGGACTCGTGCTGCAGCCATCCATTGTATAAAGAATCTGATCTAATTGAGGAGGATGCCCTTGGTGCAAGGAAGGCTGCCCAACGGAAGCTGTTGCACGAACTCGGTA
TTCCTGCTGAAGATATCCCGGTCGACCAGATCATTCCGGTTGGTCGAATGCTATACAAGGCACCCTCAGATGTCAAATGGGGGGAGCATGAATTTCTAGGGACAAAGCTA
AGACAGGATCGTAGGCAGCAGTGGTCGACCAATAGCGTTTTAAGTGATTTGAGATGGACAAAAGTGGAGAATGAAAGACTCGAAAGGGATCAGTTCCTTGTAACGGCTAC
CCTGCTTCTTTGTGTCCGGGTTGTAGAATCTTATAAGTTGAGGAATGTCGCAATGAGAGAATTATCTTATCGAGTATGTTGA

mRNA sequence

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ATGTCACTGACTCTTCTTCATCACCATTACTTGTTATATACTGCTTCACCTCTCCTTCGCATTCGTATCTCGCTCTTGTTTGTTCTCCCAATCTTTCCGCTTAGATTCTC
TCTCCCGTCTCTCCCTGCAATTCCATGGAAGACGCTCTTCTCGATGCTGGCATGGACGAAGTCCAGAAGCGCCGCATGTTCGATGATCGGTGCATGCATTTTAGTGGATG
AGAACGATCGTGTCGTGGGTCATGAATCCAAGTATAACTAAATGAACTATTGTTTTCATGGCATCTATGGTTTGGTTGTCATTAACATGGTTAATTCTATGTTATCTATG
AAGCAACGATCTGCTAAAAAGGTGACGTTTCCGCTTGCGTGGACGGACTCGTGCTGCAGCCATCCATTGTATAAAGAATCTGATCTAATTGAGGAGGATGCCCTTGGTGC
AAGGAAGGCTGCCCAACGGAAGCTGTTGCACGAACTCGGTATTCCTGCTGAAGATATCCCGGTCGACCAGATCATTCCGGTTGGTCGAATGCTATACAAGGCACCCTCAG
ATGTCAAATGGGGGGAGCATGAATTTCTAGGGACAAAGCTAAGACAGGATCGTAGGCAGCAGTGGTCGACCAATAGCGTTTTAAGTGATTTGAGATGGACAAAAGTGGAG
AATGAAAGACTCGAAAGGGATCAGTTCCTTGTAACGGCTACCCTGCTTCTTTGTGTCCGGGTTGTAGAATCTTATAAGTTGAGGAATGTCGCAATGAGAGAATTATCTTA
TCGAGTATGTTGA

Protein sequence

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MNYCFHGIYGLVVINMVNSMLSMKQRSAKKVTFPLAWTDSCCSHPLYKESDLIEEDALGARKAAQRKLLHELGIPAEDIPVDQIIPVGRMLYKAPSDVKWGEHEFLGTKL
RQDRRQQWSTNSVLSDLRWTKVENERLERDQFLVTATLLLCVRVVESYKLRNVAMRELSYRVC

CmoCh11G009570 (gene) of Cucurbita moschata (Rifu) v1 genome