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CmoCh11G010160 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G010160
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S24
Genome locationCmo_Chr11:5525751..5528461
RNA-Seq ExpressionCmoCh11G010160
SyntenyCmoCh11G010160
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588329.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]3.1e-6096.92Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

XP_004142519.1 40S ribosomal protein S24-1 [Cucumis sativus]3.1e-6096.92Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

XP_008455742.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]1.5e-5995.38Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

XP_008462725.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]4.0e-6096.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

XP_022933090.1 40S ribosomal protein S24-1-like [Cucurbita moschata]3.1e-6096.92Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

TrEMBL top hitse value%identityAlignment
A0A0A0LYE3 40S ribosomal protein S241.5e-6096.92Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

A0A1S3CHL4 40S ribosomal protein S241.9e-6096.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

A0A5D3E1B6 40S ribosomal protein S241.9e-6096.15Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

A0A6J1F3Y6 40S ribosomal protein S241.5e-6096.92Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

A0A6J1I401 40S ribosomal protein S241.5e-6096.92Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA
        KVEKSRKQMKERKNRAKKIRGVKK   S A
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFA

SwissProt top hitse value%identityAlignment
P62847 40S ribosomal protein S246.4e-3766.94Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKVS
        RKQ KERKNR KK+RG  K +
Subjt:  RKQMKERKNRAKKIRGVKKVS

Q56JU9 40S ribosomal protein S246.4e-3766.94Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKVS
        RKQ KERKNR KK+RG  K +
Subjt:  RKQMKERKNRAKKIRGVKKVS

Q8LC83 40S ribosomal protein S24-24.7e-5688.71Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKK
        K+EKSRKQ+KERKNRAKKIRGVKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKK

Q962Q6 40S ribosomal protein S242.2e-3764.52Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKLA++Y V   + +FVF F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKK
        K   +RKQ KERKNR KK+RG KK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKK

Q9SS17 40S ribosomal protein S24-11.9e-5785.71Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFALQR
        K+EKSRKQ+KERKNRAKKIRGVKK     A ++
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFALQR

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein1.4e-5885.71Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFALQR
        K+EKSRKQ+KERKNRAKKIRGVKK     A ++
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKVSKSFALQR

AT5G28060.1 Ribosomal protein S24e family protein3.4e-5788.71Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKK
        K+EKSRKQ+KERKNRAKKIRGVKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTC
TAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTTTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGT
TTGGTTTGATCTATGATTCTGTTGAAAACGCTAAAAAATACGAACCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAGAAATCAAGGAAGCAAATGAAG
GAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAAATCCTTCGCTTTACAAAGGCCTCAGACGCTGCCAAGGCCGGAAAGAAGAAATGAAGAGTC
TACTGCTGGGATTTTGTGCCTCTGCCCTTTTCTCTCTTATCATTTCTTCATTCCATCTCTCACTTAG
mRNA sequenceShow/hide mRNA sequence
CTCTCCTCTTTGCAGAACCCTAGTGTTGTTGCGCTTCGCTTCACTTCACTTCATCCTACTCCTCACCAACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTC
ATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGA
TGTGAAGGATGCAAATGCAATTTTTGTTTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATCTATGATTCTGTTGAAAACGCTAAAAAAT
ACGAACCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAG
AAAGTGAGTAAATCCTTCGCTTTACAAAGGCCTCAGACGCTGCCAAGGCCGGAAAGAAGAAATGAAGAGTCTACTGCTGGGATTTTGTGCCTCTGCCCTTTTCTCTCTTA
TCATTTCTTCATTCCATCTCTCACTTAGCTCTAGTTCTAAAGTGGTGTGTAGCCATTTTTTGAAATGAAATCGACCTCTGGAGAATTGTTGACACCCAATGTTTTAGCAG
CCTTTTTTGAAATGAAGTCTGTCAATGTCTGAAGAATTATTATTGACACCAATGTATTTTGTCGTTCAGGGTTAAAACTGAAAGGTATTTTGATTGCAAAACAATTTTAA
TGGTGTGAACCCAACTTGATAGTTGCATTTTTTTTTGTATTATTTATTAATTTATCAACTATGTTTCATGTTTCATGTTCTGTA
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMK
ERKNRAKKIRGVKKVSKSFALQRPQTLPRPERRNEESTAGILCLCPFLSYHFFIPSLT