CuGenDBv2

Gene ID	CmoCh11G010510
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Cullin-3
Genome location	Cmo_Chr11:5862496..5863509
RNA-Seq Expression	CmoCh11G010510
Synteny	CmoCh11G010510
Gene Ontology terms	GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0031625 - ubiquitin protein ligase binding (molecular function)
InterPro domains	IPR016159 - Cullin repeat-like-containing domain superfamily IPR045093 - Cullin

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053753.1 Cullin-3 [Cucumis melo var. makuwa]

1.6e-24

85.53

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRL--LLLLFISLLLWIKIRLDMT
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRL  LLLLFISLL +  +R  ++
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRL--LLLLFISLLLWIKIRLDMT

KAE9466562.1 hypothetical protein C3L33_01524, partial [Rhododendron williamsianum]

1.5e-22

96.61

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLLLL
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR  LLL
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLLLL

XP_019224846.1 PREDICTED: cullin-3A-like [Nicotiana attenuata]

7.6e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

XP_022930444.1 cullin-3A-like [Cucurbita moschata]

7.6e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

XP_022970588.1 cullin-3A-like [Cucurbita maxima]

7.6e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DQV3 Cullin-3

7.9e-25

85.53

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRL--LLLLFISLLLWIKIRLDMT
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRL  LLLLFISLL +  +R  ++
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRL--LLLLFISLLLWIKIRLDMT

A0A6A4MBG3 CULLIN_2 domain-containing protein (Fragment)

7.4e-23

96.61

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLLLL
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR  LLL
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLLLL

A0A6J1I399 cullin-3A-like

3.7e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

A0A6J5WZL7 CULLIN_2 domain-containing protein

3.7e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

M5X9N4 CULLIN_2 domain-containing protein

3.7e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

SwissProt top hits

e value

%identity

Alignment

Q54NZ5 Cullin-3

7.9e-06

53.85

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Query:  HRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        H V+ DP + ++TWK+L+ A+ +I+  NAS LSFEELYR
Subjt:  HRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q6DE95 Cullin-3-A

1.5e-04

46.15

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Query:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        ++K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYR
Subjt:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q6GPF3 Cullin-3-B

1.5e-04

46.15

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Query:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        ++K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYR
Subjt:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q9C9L0 Cullin-3B

9.3e-23

94.44

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q9ZVH4 Cullin-3A

1.9e-20

87.04

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFKHRVVVDPKYA+KTW+ILE AIH+IYN +ASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Arabidopsis top hits

e value

%identity

Alignment

AT1G26830.1 cullin 3

1.4e-21

87.04

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFKHRVVVDPKYA+KTW+ILE AIH+IYN +ASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

AT1G69670.1 cullin 3B

6.6e-24

94.44

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Sequences

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CDS sequence

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ATGAGTGCGCAGAAGAAGAGGAATTTCCAGATAGAGGCTTTTAAACATCGGGTCGTGGTGGATCCAAAATATGCTGAGAAGACGTGGAAGATTTTGGAACATGCAATTCA
CGAAATTTACAATCATAATGCCAGCGGGCTTAGCTTCGAGGAGCTTTACAGGTTGCTTCTGCTTCTTTTCATCTCACTGTTGCTATGGATTAAGATTAGATTAGATATGA
CCTTTTTGTATTACTTCTTGAACTTACTGATCAAGGATGTGATATCCGTGTGGATTTATGTGATACTGAGATACAAGTACGTTTTGTAA

mRNA sequence

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Protein sequence

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MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLLLLFISLLLWIKIRLDMTFLYYFLNLLIKDVISVWIYVILRYKYVL

CmoCh11G010510 (gene) of Cucurbita moschata (Rifu) v1 genome