; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G010850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G010850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor RF2a-like
Genome locationCmo_Chr11:6077128..6078178
RNA-Seq ExpressionCmoCh11G010850
SyntenyCmoCh11G010850
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588406.1 bZIP transcription factor 18, partial [Cucurbita argyrosperma subsp. sororia]5.5e-24100Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ

XP_022932215.1 uncharacterized protein LOC111438548 [Cucurbita moschata]3.2e-24100Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQQ
        ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQQ

XP_022970655.1 uncharacterized protein LOC111469572 isoform X1 [Cucurbita maxima]3.0e-1477.33Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQL---QQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTE+NAQ H     + QPS +HH  QLQ    QQQHHHQQQQEMQKQNGSTATKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQL---QQQHHHQQQQEMQKQNGSTATKPESNQ

XP_022970661.1 uncharacterized protein LOC111469572 isoform X2 [Cucurbita maxima]6.7e-2291.67Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTELNAQPH     +HQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ

XP_023530669.1 probable transcription factor PosF21 [Cucurbita pepo subsp. pepo]3.7e-2088.89Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTELNAQPH     + QPSNSHHS+QLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ

TrEMBL top hitse value%identityAlignment
A0A1S3BJD5 uncharacterized protein LOC1034903342.0e-1175Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTELNAQ H     + QP+ +HHS QLQLQ   HHQQQQ+MQ QNGST TKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ

A0A6J1C4L8 uncharacterized protein LOC111007873 isoform X11.7e-1072.06Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQE-MQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATT++NAQ H      +HH  QLQLQQQH  QQQQ+ MQ+QNGS  TKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQE-MQKQNGSTATKPESNQ

A0A6J1F1L6 uncharacterized protein LOC1114385481.6e-24100Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQQ
        ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQQ

A0A6J1I171 uncharacterized protein LOC111469572 isoform X23.2e-2291.67Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTELNAQPH     +HQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTATKPESNQ

A0A6J1I3G1 uncharacterized protein LOC111469572 isoform X11.5e-1477.33Show/hide
Query:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQL---QQQHHHQQQQEMQKQNGSTATKPESNQ
        ALNEALTAEVQRLKLATTE+NAQ H     + QPS +HH  QLQ    QQQHHHQQQQEMQKQNGSTATKPESNQ
Subjt:  ALNEALTAEVQRLKLATTELNAQPH-----LHQPSNSHHSHQLQL---QQQHHHQQQQEMQKQNGSTATKPESNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATCCGAGTTCATACCACTGTCCAGTACATTGATCCCGAATGTTACCTGTTACTGTCGACTCGAGTTTTAAAAGTTAGGACTTCAATTGTGGAATTCATTTATGC
TTCTGCTTGTATTCATCGTTCTTTATCAAATGTGACAGCTCTAAACGAAGCCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACAACAGAGCTAAACGCACAGCCTC
ATCTGCACCAACCTTCCAACAGTCACCATAGCCACCAGCTTCAGCTTCAGCAGCAGCACCATCACCAACAACAGCAAGAGATGCAGAAGCAGAATGGGAGTACAGCCACA
AAACCAGAGTCCAACCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAATCCGAGTTCATACCACTGTCCAGTACATTGATCCCGAATGTTACCTGTTACTGTCGACTCGAGTTTTAAAAGTTAGGACTTCAATTGTGGAATTCATTTATGC
TTCTGCTTGTATTCATCGTTCTTTATCAAATGTGACAGCTCTAAACGAAGCCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACAACAGAGCTAAACGCACAGCCTC
ATCTGCACCAACCTTCCAACAGTCACCATAGCCACCAGCTTCAGCTTCAGCAGCAGCACCATCACCAACAACAGCAAGAGATGCAGAAGCAGAATGGGAGTACAGCCACA
AAACCAGAGTCCAACCAACAATAG
Protein sequenceShow/hide protein sequence
MSIRVHTTVQYIDPECYLLLSTRVLKVRTSIVEFIYASACIHRSLSNVTALNEALTAEVQRLKLATTELNAQPHLHQPSNSHHSHQLQLQQQHHHQQQQEMQKQNGSTAT
KPESNQQ