; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G010990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G010990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger protein GIS2-like
Genome locationCmo_Chr11:6142067..6146083
RNA-Seq ExpressionCmoCh11G010990
SyntenyCmoCh11G010990
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588419.1 hypothetical protein SDJN03_16984, partial [Cucurbita argyrosperma subsp. sororia]3.3e-15499.24Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGI--GSG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGI  GSG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGI--GSG

Query:  GGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        GGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  GGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022136056.1 zinc finger protein GIS2 [Momordica charantia]5.5e-14994.64Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSP+ RKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+A+SC N
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L +R DRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG GGGYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022933286.1 zinc finger protein GIS2-like [Cucurbita moschata]1.0e-155100Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022971383.1 zinc finger protein GIS2-like [Cucurbita maxima]1.6e-15399.23Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLG+RGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SIR GGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_023531028.1 zinc finger protein GIS2-like [Cucurbita pepo subsp. pepo]1.3e-15398.11Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLG+RGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIR----GGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SIR    GGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIR----GGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

TrEMBL top hitse value%identityAlignment
A0A0A0K138 Uncharacterized protein2.1e-14693.87Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC N
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLG+RGDRGI SGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S R G G GYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFM+R+PRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A1S3BIU7 zinc finger protein GIS24.2e-14794.64Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC N
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLG+RGDRGI SGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S R G G GYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1C2F8 zinc finger protein GIS22.6e-14994.64Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSP+ RKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+A+SC N
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L +R DRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG GGGYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1EYM8 zinc finger protein GIS2-like5.0e-156100Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1I6P4 zinc finger protein GIS2-like7.9e-15499.23Show/hide
Query:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
Subjt:  MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLG+RGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SIR GGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

SwissProt top hitse value%identityAlignment
O42395 Cellular nucleic acid-binding protein1.5e-2136.09Show/hide
Query:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHVASSC-----SNEGICHTCGKAGHRA
        N C  C R GH+ARECP                          IC+ CG  GH+A +C  +    C+NC   GH+A  C       E  C+ CGK GH A
Subjt:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHVASSC-----SNEGICHTCGKAGHRA

Query:  RECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        R+C        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  RECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

P36627 Cellular nucleic acid-binding protein homolog9.1e-2233.16Show/hide
Query:  CHNCGLPGHIASECTTKSLCWNCREPGHVASSCS---NEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
        C+NCG  GH A ECT  S+C+NC + GH AS C+    E  C+ CG AGH  R+C + P P      C  C + GHIA DC      +  R  GH     
Subjt:  CHNCGLPGHIASECTTKSLCWNCREPGHVASSCS---NEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC

Query:  PNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCM--SPLMICHNCGGRGHLAYECPS
         ++  C  C   GH AR C                               V C +C ++GH S +C   S   +C+ C   GH+A  C S
Subjt:  PNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCM--SPLMICHNCGGRGHLAYECPS

P53849 Zinc finger protein GIS21.8e-2536.91Show/hide
Query:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAPPLPPGDLRL-CNNCYKQGHIA
        C  C + GH A +C +  +C+NC  PGH+ ++CT         C+NC E GHV S C+ +  C  C + GH +REC  P       ++ C  C    H+A
Subjt:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAPPLPPGDLRL-CNNCYKQGHIA

Query:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS
         DC  E       C  C + GH++RDC ND +C  CN +GH+++ CPK+
Subjt:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS

P62633 Cellular nucleic acid-binding protein4.5e-2135.06Show/hide
Query:  NLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHVASSC-----SNEGICHTCGK
        N C  C R GH+ARECP                                IC+ CG  GH+A +C   +  C+NC   GH+A  C       E  C+ CGK
Subjt:  NLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHVASSC-----SNEGICHTCGK

Query:  AGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
         GH AR+C        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  AGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

Q3T0Q6 Cellular nucleic acid-binding protein7.0e-2236.53Show/hide
Query:  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHVASSC-----SNEGICHTCGKAGHRARE
        N C  C R GH+ARECP                         IC+ CG  GH+A +C   +  C+NC   GH+A  C       E  C+ CGK GH AR+
Subjt:  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHVASSC-----SNEGICHTCGKAGHRARE

Query:  CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        C        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

Arabidopsis top hitse value%identityAlignment
AT1G75560.1 zinc knuckle (CCHC-type) family protein6.5e-9263.02Show/hide
Query:  SDSRSRSRSRSRSPVARKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        S SRSR R RSRSP  R++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGHVAS+CSN
Subjt:  SDSRSRSRSRSRSPVARKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICH+CGK+GHRAR+C+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK       GD      G 
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGG--GGGYRDVVCRTCQQLGHMSRD--CMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
         +R GG   GG           L  MSRD   +S ++ICHNCGGRGH AYECPS R  +R  RRY
Subjt:  SIRGGG--GGGYRDVVCRTCQQLGHMSRD--CMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

AT1G75560.2 zinc knuckle (CCHC-type) family protein6.5e-9263.02Show/hide
Query:  SDSRSRSRSRSRSPVARKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN
        S SRSR R RSRSP  R++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGHVAS+CSN
Subjt:  SDSRSRSRSRSRSPVARKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG
        EGICH+CGK+GHRAR+C+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK       GD      G 
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGG

Query:  SIRGGG--GGGYRDVVCRTCQQLGHMSRD--CMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY
         +R GG   GG           L  MSRD   +S ++ICHNCGGRGH AYECPS R  +R  RRY
Subjt:  SIRGGG--GGGYRDVVCRTCQQLGHMSRD--CMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY

AT2G17870.1 cold shock domain protein 37.6e-1632.14Show/hide
Query:  CHNCGLPGHIASECTTKSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTA-----PPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLAR
        C NCG  GH+A +C   S        G        EG C+ CG  GH AR+C            G  R C +C + GH+A DC      N  R  G   R
Subjt:  CHNCGLPGHIASECTTKSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTA-----PPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLAR

Query:  DCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPL--------MICHNCGGRGHLAYEC
            D  C +C   GH AR C +             +GGG++ GGG        C TC  +GH+++ C S +          C+ CGG GHLA +C
Subjt:  DCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPL--------MICHNCGGRGHLAYEC

AT3G43590.1 zinc knuckle (CCHC-type) family protein3.0e-1225.68Show/hide
Query:  CHNCGLPGHIASECTT----KSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCR
        C++CG  GH +  C T    +  C+ C    H A  CS    C+ C K GHRA++C           +C  C   GH    C  E +        C  C+
Subjt:  CHNCGLPGHIASECTT----KSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCR

Query:  KTGHLARDCPNDPI-----CNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMI-----------CHN
          GHL    P + +     C  C   GH    C +        D        + R           C  C + GH +R+C +   I           C+ 
Subjt:  KTGHLARDCPNDPI-----CNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMI-----------CHN

Query:  CGGRGHLAYECPSGRFMERYPR
        C G GH A ECP+   + +  R
Subjt:  CGGRGHLAYECPSGRFMERYPR

AT4G36020.1 cold shock domain protein 18.7e-2030.8Show/hide
Query:  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREPGHVASSCSNEGI-------------CHTCGKAGHRARECT
        +L K     G+ AR     + C+NCG  GHI+ +C                  C+NC + GH A  C++ G              C+TCG  GH AR+CT
Subjt:  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREPGHVASSCSNEGI-------------CHTCGKAGHRARECT

Query:  APPLPPGDLR--------LCNNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNVLGERGDR
           +  GD R         C  C   GH A DCT + A             C +C   GH+ARDC         C  C  SGH+AR C +          
Subjt:  APPLPPGDLR--------LCNNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNVLGERGDR

Query:  GIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMS
                 RG GGGG  D  C  C + GH +R+C S
Subjt:  GIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGGATAGCAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCCCAGTGGCTCGTAAGATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATC
ACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAACTGCAAACGTCCTGGCCACTTTGCAAGAGAATGCCCTAATGTGGCAATTTGTCACAACTGTGGTCTCCCTGGGC
ATATTGCTTCAGAGTGTACAACAAAGTCACTATGCTGGAATTGTCGTGAACCTGGTCATGTTGCAAGTAGCTGTTCAAATGAAGGTATCTGCCACACCTGCGGGAAGGCA
GGACATCGAGCCAGGGAATGCACAGCTCCTCCGCTGCCACCCGGGGACTTGAGGCTTTGCAACAATTGCTACAAGCAGGGTCATATAGCAGCTGATTGTACTAATGAAAA
GGCATGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGCAATGTATCTGGGCACGTAGCCAGACAGTGTCCGAAAT
CCAATGTTCTCGGAGAACGGGGAGACCGAGGCATCGGCAGTGGCGGTGGCAGTATACGTGGTGGTGGTGGTGGTGGTTACCGGGATGTTGTGTGCAGGACCTGCCAGCAG
CTTGGCCATATGAGTAGAGATTGCATGAGCCCTTTGATGATTTGCCATAACTGTGGGGGACGTGGTCACCTAGCATACGAATGCCCATCGGGTCGGTTTATGGAGCGTTA
TCCCAGGAGGTACTGA
mRNA sequenceShow/hide mRNA sequence
CAAATCTTCGTTCTCGAGCGGCTGTTCTTCCGCGAATCGTCTCTCAGTTGCAGCTTCGTTCGTAATTTAACATCTTCAACGATTTGAGCTACGGCAATATTGGCCACAAG
CACAGAGCCATTGACATTAGATAAGGGGTGAAGTGGTTTATAAGTTCCAGCGCTGTAGATTACATGAATATTTTCTCTCTCCCAGTATGATGTGACGCCAACCGATCACG
TCTGAATAGATCTCATGATTTGTGGCAGTTGTAGTTATTATTGGTGTTAGGTATGGTAATTAGTTCGCCGTGTTAGCTTTGTTCGTTCTTATTAGAAAAATATCTATCCA
GCTTATGTCAATGTCGTTTCTAACATTATGTTGGAATGGGCTAATTACGGGACTAAGGTTGATAACTGTAACGGTTGCCCTAATGGACTCTATAAATTTCACTGCAAAAA
TAGTAACTAGTGGAAGGGCCGCTTCTAAAATGACAACTCGTGGGATCATCAGTTGTAAACTGTGGCAATTATAAAGGTTTTGATATTAATAATTTAATGGTAATAATAGT
GAAAGAAGTTGATGAAGCAATCTGGAATGTGAAATTTATTGGACGTTGTTTGTGGATGATCCACTACTGAGTTAATTCTTTGCTTGGTGATGTGTTGGTGATATTCACTG
TTTACGAGCCATACTTGAAATTGCGAGAAGAATGTAGTTGAAGAATTGGATAATTATTCTTGGATGTTGGGGGGATGTGGTATTTACTTTGTTGGAATTATTGCTTTGTT
GAATGGGATGAGCACTTGGTGTTTTCTGTTTGAAGGGAAGGAAAGAGTTTGGTTTGGATTCGTCGATATGAATTTGGGTGTGTGGTTGTTATGTGGACAGGGAGGAGGCA
GCATTGGTGTAATATTTTGGTGGTGGTGATATTTTCACATTTCAGCGGGGATAAGTGTTGAAGAATAAGTTTGGAAATGAGTTCGGATAGCAGGAGTCGAAGCAGGAGCA
GGAGCAGGAGCCCAGTGGCTCGTAAGATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAG
AACTGCAAACGTCCTGGCCACTTTGCAAGAGAATGCCCTAATGTGGCAATTTGTCACAACTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGTACAACAAAGTCACTATG
CTGGAATTGTCGTGAACCTGGTCATGTTGCAAGTAGCTGTTCAAATGAAGGTATCTGCCACACCTGCGGGAAGGCAGGACATCGAGCCAGGGAATGCACAGCTCCTCCGC
TGCCACCCGGGGACTTGAGGCTTTGCAACAATTGCTACAAGCAGGGTCATATAGCAGCTGATTGTACTAATGAAAAGGCATGCAACAATTGCAGGAAGACAGGCCATCTT
GCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGCAATGTATCTGGGCACGTAGCCAGACAGTGTCCGAAATCCAATGTTCTCGGAGAACGGGGAGACCGAGGCAT
CGGCAGTGGCGGTGGCAGTATACGTGGTGGTGGTGGTGGTGGTTACCGGGATGTTGTGTGCAGGACCTGCCAGCAGCTTGGCCATATGAGTAGAGATTGCATGAGCCCTT
TGATGATTTGCCATAACTGTGGGGGACGTGGTCACCTAGCATACGAATGCCCATCGGGTCGGTTTATGGAGCGTTATCCCAGGAGGTACTGAAGACGTGATTAGAAGGAG
GCCTTCGGATTTTGCTTCGAGTTTAGACATTTTGGGTACTAAACTCTATAGATTGCTCTGCTCTGCTTGCTGCTTACATGGTGGTAGTATTTGCTCATGTTGTTACCAAA
CATTGTTTTGTGGGTTAGACCATGAATTTTTAGTATTGTTTATCTTGCTTCTTCTATATATAATAAGACTTCCTTTCAATGATTCATCAGTTTAGTTTGTTCATTTCACC
CTTAACGAAATTTCCTTGTAAAGTATGAACTTTGACTCGCTTGTTATCAACGACGTTGTGAGTTGTGCTCATATCGGGTTATTCGACCTA
Protein sequenceShow/hide protein sequence
MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSNEGICHTCGKA
GHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQ
LGHMSRDCMSPLMICHNCGGRGHLAYECPSGRFMERYPRRY