CuGenDBv2

Gene ID	CmoCh11G011040
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	CRM domain-containing protein
Genome location	Cmo_Chr11:6168035..6168703
RNA-Seq Expression	CmoCh11G011040
Synteny	CmoCh11G011040
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001890 - RNA-binding, CRM domain IPR035920 - YhbY-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033773.1 putative RNA-binding CRS1 / YhbY domain protein [Cucumis melo var. makuwa]

4.0e-32

70.27

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IK+LGNCP ELEDVVR+LEESTGSVVV++IGRTVIIYRPSI+KMKAE+EKRR+RK+Y+RKEPDRVK  LQ KV+TPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRG+SR+
Subjt:  SNRGRRGSSRF

KAG6588422.1 hypothetical protein SDJN03_16987, partial [Cucurbita argyrosperma subsp. sororia]

7.5e-39

83.78

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAE+EKRRARKMYVRKEPDRVKLFLQNKVQTPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRGSSRF
Subjt:  SNRGRRGSSRF

XP_008448058.1 PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]

8.8e-32

69.37

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+KMKAE+EKRR+RK+Y+RKEPDRVK  LQ KV+TPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRG+SR+
Subjt:  SNRGRRGSSRF

XP_022971306.1 uncharacterized protein LOC111470060 [Cucurbita maxima]

2.2e-38

82.88

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAE+EKRRARK+YVRKEPDRVKLFLQNKVQTPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRGSSRF
Subjt:  SNRGRRGSSRF

XP_023529380.1 uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo]

1.7e-38

82.88

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IKVLGNCPGELEDVV+QLEESTGSVVVSKIGRTVIIYRPSISKMKAE+EKRRARKMYVRKEPDRVKLFLQNKVQTPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRGSSRF
Subjt:  SNRGRRGSSRF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K2C3 CRM domain-containing protein

8.1e-31

69.09

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IK+LGNCP ELEDVVR+L ESTGSVVV++IGRTVIIYRPSI+KMKAE+EKRRARK+Y+RKEPDRVK  LQ K++TP+S
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSR
        SNRGRRG+SR
Subjt:  SNRGRRGSSR

A0A1S3BJF7 uncharacterized protein LOC103490350

4.3e-32

69.37

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+KMKAE+EKRR+RK+Y+RKEPDRVK  LQ KV+TPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRG+SR+
Subjt:  SNRGRRGSSRF

A0A5D3DFJ1 Putative RNA-binding CRS1 / YhbY domain protein

1.9e-32

70.27

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IK+LGNCP ELEDVVR+LEESTGSVVV++IGRTVIIYRPSI+KMKAE+EKRR+RK+Y+RKEPDRVK  LQ KV+TPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRG+SR+
Subjt:  SNRGRRGSSRF

A0A6J1C409 uncharacterized protein LOC111007723

3.1e-30

81.52

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Query:  QIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTP--RSSNRGRRGSSRF
        +IK+L NCP EL+D VRQLEESTGSVVVS+IGRTVIIYRPSISKMKAE++KR+ARK+YVRKEPDRVK  LQNKVQTP   +SNRGRRGSSRF
Subjt:  QIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTP--RSSNRGRRGSSRF

A0A6J1I2Z3 uncharacterized protein LOC111470060

1.1e-38

82.88

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS
        S +   L  S I+ +E  +  +IKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAE+EKRRARK+YVRKEPDRVKLFLQNKVQTPRS
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRS

Query:  SNRGRRGSSRF
        SNRGRRGSSRF
Subjt:  SNRGRRGSSRF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein

4.9e-12

45.95

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Query:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRR
        S +  S+  S ++ +E  +  ++K+   CPGELED++ +LEE+TGSV V +I RTVI+YRPS +K+KA+++K+R
Subjt:  SNIRKSLDQSRIKRIEPLD-TQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRR

AT4G39040.1 RNA-binding CRS1 / YhbY (CRM) domain protein

2.8e-12

44.68

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Query:  QIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPD-----RVKLFLQNKVQTPRSSNRGRRGSSR
        ++K+    P ELED V+ LEE+TGSV V +IGRTVI+YRPS +KMKAE +K+   +M + +          K F   +  + R   RGRRG SR
Subjt:  QIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPD-----RVKLFLQNKVQTPRSSNRGRRGSSR

AT4G39040.2 RNA-binding CRS1 / YhbY (CRM) domain protein

1.4e-11

52.46

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Query:  QIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRK
        ++K+    P ELED V+ LEE+TGSV V +IGRTVI+YRPS +KMKAE +K+   +M + +
Subjt:  QIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRK

Sequences

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CDS sequence

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mRNA sequence

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ATGTCGAATATTAGAAAATCCTTAGACCAAAGTAGAATTAAAAGAATTGAACCATTGGATACACAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGT
GAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGACGAAAAACGAC
GTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGG
TTTTGATCTGAAGTAGAATTCACATCTAACAGGTTTGTTTTGAAATTTTATCCATGTAAGTTTTTTGTTACACCGTTCTAAATGTTGCAGTTCCACTAGTTTTTATTTAG
TTCATCAATATAGAGGCTTTTGTTCTGCTTTCGTTTCACAGGTTTAGAGTTTAAACAAGATTATAGTGTCTGTGTGAGTTAGTAGGAAGAGCTTAAAATTGGCATAACCG
AATATAAATCAAATACATCGAGTTATATAATTAT

Protein sequence

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MSNIRKSLDQSRIKRIEPLDTQIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEDEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSR
F

CmoCh11G011040 (gene) of Cucurbita moschata (Rifu) v1 genome