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CmoCh11G011050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCRM domain-containing protein
Genome locationCmo_Chr11:6177033..6177674
RNA-Seq ExpressionCmoCh11G011050
SyntenyCmoCh11G011050
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001890 - RNA-binding, CRM domain
IPR035920 - YhbY-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588422.1 hypothetical protein SDJN03_16987, partial [Cucurbita argyrosperma subsp. sororia]3.7e-8793.07Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL +PSA ISAACSHQFKPNSSIFLIRQSPHRSRSF+PSASVSFSRSFSSTISDTSAVGFEDDDVIDDD+E
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF
        SDY DEVEIEDFELEDNTVEDGLETAVASDSS AVVS SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK+    
Subjt:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF

Query:  QC
         C
Subjt:  QC

KAG7022267.1 yqeI [Cucurbita argyrosperma subsp. argyrosperma]3.7e-8793.07Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL +PSA ISAACSHQFKPNSSIFLIRQSPHRSRSF+PSASVSFSRSFSSTISDTSAVGFEDDDVIDDD+E
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF
        SDY DEVEIEDFELEDNTVEDGLETAVASDSS AVVS SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK+    
Subjt:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF

Query:  QC
         C
Subjt:  QC

XP_022927947.1 uncharacterized protein LOC111434725 [Cucurbita moschata]2.2e-9294.86Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK--VCS
        SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK   C 
Subjt:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK--VCS

Query:  FFQCSLLCLIELFL
         FQ SL  L  L L
Subjt:  FFQCSLLCLIELFL

XP_022971306.1 uncharacterized protein LOC111470060 [Cucurbita maxima]1.8e-8692.57Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL +PSA ISAACSHQFKPNSSIFLIRQSPHRSRSF+PSASVSFSRSFSS IS TSAVGFEDDDVIDDDDE
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF
        SDY DEVEIEDFELEDNTVEDGLETAVASDSS AVVSRSEVK+IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK+    
Subjt:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF

Query:  QC
         C
Subjt:  QC

XP_023529380.1 uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo]5.7e-8892.79Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLS+PSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDY------GDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELL
        SDY       DEVEIEDFELEDNTVEDGLETAVASDSS AVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELL
Subjt:  SDY------GDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELL

Query:  KVCSFFQC
        K+     C
Subjt:  KVCSFFQC

TrEMBL top hitse value%identityAlignment
A0A0A0K2C3 CRM domain-containing protein8.1e-5669.76Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPS--AAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDD
        MGASI+SS S     HSLLLRS+PSS STF SKPS  AAIS  C HQFKP+SS  L R+SPH  R F+PSA +SFSRSFSSTISD S V F++ DD I+D
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPS--AAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDD

Query:  DDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVC
         DESDY DEVE+ED       V DG ET VAS+ S  ++SR+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTPGLATSFIETLEANELLK+ 
Subjt:  DDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVC

Query:  SFFQC
            C
Subjt:  SFFQC

A0A1S3BJF7 uncharacterized protein LOC1034903502.1e-5670.24Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPS--AAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGF-EDDDVIDD
        M ASI+SS SHSH  HSLLLRSVPSS STF SKPS  AA S  C HQFKP+SS FL R+SPH SR F+PS S+SFSR FSST+S  S V F E DD I+D
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPS--AAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGF-EDDDVIDD

Query:  DDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVC
         DESDY DEVE+ED      +V DG E  VAS+ S  V++R+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTPGLATSFIETLEANELLK+ 
Subjt:  DDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVC

Query:  SFFQC
            C
Subjt:  SFFQC

A0A6J1C409 uncharacterized protein LOC1110077232.2e-2466.99Show/hide
Query:  ESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSF
        +SDY  EV I DFELE+ ++    +    S  S +VV+ SEVKN+PSLTVKEKKELASYAHSLGKKLK+QLVGKSGVTPGLA SF+ETLEANELLK+   
Subjt:  ESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSF

Query:  FQC
          C
Subjt:  FQC

A0A6J1EIK7 uncharacterized protein LOC1114347251.1e-9294.86Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK--VCS
        SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK   C 
Subjt:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK--VCS

Query:  FFQCSLLCLIELFL
         FQ SL  L  L L
Subjt:  FFQCSLLCLIELFL

A0A6J1I2Z3 uncharacterized protein LOC1114700608.9e-8792.57Show/hide
Query:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE
        MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL +PSA ISAACSHQFKPNSSIFLIRQSPHRSRSF+PSASVSFSRSFSS IS TSAVGFEDDDVIDDDDE
Subjt:  MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDE

Query:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF
        SDY DEVEIEDFELEDNTVEDGLETAVASDSS AVVSRSEVK+IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK+    
Subjt:  SDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFF

Query:  QC
         C
Subjt:  QC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein3.5e-1135.6Show/hide
Query:  SPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGD
        S + ++LIH LL    P+S      +P +   +    SH    +SS+ L    P    SFSP   +   +SFSS               +D+ ++ +   
Subjt:  SPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGD

Query:  EVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV
         +     E+ D+  EDG E  + S      +  +   +   L+ KEK++LASYAH LG KLKSQLVGKSGVT  +  SF+ETLE NELLKV
Subjt:  EVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV

AT4G39040.1 RNA-binding CRS1 / YhbY (CRM) domain protein1.8e-1540.3Show/hide
Query:  SSPSHSHLIHSLLLRSVPSSLSTFLSKP---SAAISAACSHQFKPNSSIFLIRQSPHRS-----RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDD
        +S S +HLIH+LL    P S      +P   SA++S + +H+ KP    F  +  P  S     +SFS            S   D SA  +E +D  +++
Subjt:  SSPSHSHLIHSLLLRSVPSSLSTFLSKP---SAAISAACSHQFKPNSSIFLIRQSPHRS-----RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDD

Query:  DESDYG---DEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK
        DE D G    E  IED E  +   E G +     ++       S +K    L++KEKKELASYAHSLG KLK QLVGKSGVT  +  SF+ETLE NELLK
Subjt:  DESDYG---DEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK

Query:  V
        V
Subjt:  V

AT4G39040.2 RNA-binding CRS1 / YhbY (CRM) domain protein1.8e-1540.3Show/hide
Query:  SSPSHSHLIHSLLLRSVPSSLSTFLSKP---SAAISAACSHQFKPNSSIFLIRQSPHRS-----RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDD
        +S S +HLIH+LL    P S      +P   SA++S + +H+ KP    F  +  P  S     +SFS            S   D SA  +E +D  +++
Subjt:  SSPSHSHLIHSLLLRSVPSSLSTFLSKP---SAAISAACSHQFKPNSSIFLIRQSPHRS-----RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDD

Query:  DESDYG---DEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK
        DE D G    E  IED E  +   E G +     ++       S +K    L++KEKKELASYAHSLG KLK QLVGKSGVT  +  SF+ETLE NELLK
Subjt:  DESDYG---DEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLK

Query:  V
        V
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCC
GCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCC
GTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGAT
GAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAA
GTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGC
GTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTA
TTTCTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCC
GCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCC
GTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGAT
GAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAA
GTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGC
GTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTA
TTTCTTGGCTGA
Protein sequenceShow/hide protein sequence
MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGD
EVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKVCSFFQCSLLCLIEL
FLG