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CmoCh11G011180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 3
Genome locationCmo_Chr11:6295785..6296519
RNA-Seq ExpressionCmoCh11G011180
SyntenyCmoCh11G011180
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588434.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]6.2e-4293.55Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL
        MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL

KAG7022282.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4294.62Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL

XP_022933513.1 protein RADIALIS-like 3 [Cucurbita moschata]1.9e-46100Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

XP_022971553.1 protein RADIALIS-like 3 [Cucurbita maxima]4.2e-4698.96Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

XP_023531644.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]2.1e-4596.88Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLKHLRPEAMWT KQNKLFEMALALYDKETPERWQNVAKA+SGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

TrEMBL top hitse value%identityAlignment
A0A6J1C2H2 protein RADIALIS-like 31.0e-3479Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR----AAGNGDEELRLLKSLKFQ
        MASSSLK  RPEA WT KQNKLFE ALALYDKETPERWQN+A AV GKSA+EV+RHY+ILLEDL+RIESG VPIPNYR    AAGN DEELRLLK LK +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR----AAGNGDEELRLLKSLKFQ

A0A6J1F4Y7 protein RADIALIS-like 39.1e-47100Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

A0A6J1GKW1 protein RADIALIS-like 34.7e-3581.25Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLK  RPEA WT KQNKLFE ALALYDKETPERW N+A AV GKSA+EV+RHYEILLEDL RIESG VPIPNYR   NGDEELRLLK LK Q
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

A0A6J1I772 protein RADIALIS-like 32.0e-4698.96Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

A0A6J1ICR6 protein RADIALIS-like 31.2e-3582.29Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
        MASSSLK  RPEA WT KQNKLFE ALALYDKE PERW N+A AV GKSA+EV+RHYEILLEDLQRIESG VPIPNYR A NGDEELRLLK LK Q
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.7e-2352.48Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKF
        MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ EEV+RHYE+L++D+  IE+G VP PNYR +G   NG   +E + +++++ 
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKF

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 61.1e-2254.55Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK
        MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL+EDL  IE+G VP+PNY+     +    D + R +K+LK
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK

Q58FS3 Transcription factor RADIALIS3.7e-2155.42Show/hide
Query:  WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-AAGNGDEELRLLKSLKFQ
        W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ EEV++HYEIL+ED++ IESG VP PNYR   GN   + +  ++LK +
Subjt:  WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-AAGNGDEELRLLKSLKFQ

Q6NNN0 Protein RADIALIS-like 33.3e-2262.2Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGN
        MAS+S+      A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSAEEV RHYE+L+ D+  IESG  P PNYR+ GN
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGN

Q8GW75 Protein RADIALIS-like 59.4e-2555.34Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSL
        MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSAEEV+RHY+IL+EDL  IE   VP+P Y       ++ G  D +LRL+K++
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSL

Query:  KFQ
        + Q
Subjt:  KFQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.7e-2655.34Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSL
        MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSAEEV+RHY+IL+EDL  IE   VP+P Y       ++ G  D +LRL+K++
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSL

Query:  KFQ
        + Q
Subjt:  KFQ

AT1G75250.1 RAD-like 65.3e-2362.82Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR
        MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL+EDL  IE+G VP+PNY+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR

AT1G75250.2 RAD-like 68.2e-2454.55Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK
        MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL+EDL  IE+G VP+PNY+     +    D + R +K+LK
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK

AT2G21650.1 Homeodomain-like superfamily protein2.5e-2048.54Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-AAGNG------DEELRLLKSL
        MAS S+        WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ EE +R Y++L+ D++ IE+G VP P+Y+   GN       DEE R ++S+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYR-AAGNG------DEELRLLKSL

Query:  KFQ
        K Q
Subjt:  KFQ

AT4G39250.1 RAD-like 14.8e-2452.48Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKF
        MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ EEV+RHYE+L++D+  IE+G VP PNYR +G   NG   +E + +++++ 
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKF

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAG
ATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTA
TTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTGCTCAAGTCGCTTAAGTTTCAATGA
mRNA sequenceShow/hide mRNA sequence
TTGATCACCATCTAAACCAGAACCCCATCTCAAAATTGTTCTTCTCGAATTCTTTTTCCAATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGAC
AAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCG
AAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTGCTC
AAGTCGCTTAAGTTTCAATGAAGTTGGCTCAAATGGCTGCGTGGATTCATACCTATTTTACTCTACAACTTTATCTTTTAAAGCCTTTTATGTACAATTAACGATTTGCT
TCATTATCATTTGTTAATTATATATTACCCTTTCTTCAATACCGAAAGATTCTATTGACATGATGACTCTGATATCATATTCGGAATTACGGGCATCATCATCGGTATGA
TATTGTGTACTTAGATTTTGTGAGATAGTGTTACTTACTTGTAAACTCATATTCTTCCTCTTAATTAATTAACCAAAGTGGG
Protein sequenceShow/hide protein sequence
MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ