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CmoCh11G011230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
Genome locationCmo_Chr11:6333937..6335225
RNA-Seq ExpressionCmoCh11G011230
SyntenyCmoCh11G011230
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588438.1 hypothetical protein SDJN03_17003, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3191.76Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE
        MASVCRSVLTATG+R + GRTRTL+RKTLNPMP SSSS+GLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE

KAG7022286.1 hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-3391.95Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRSVLTATG+R + GRTRTL+RKTLNPMP SSSS+GLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF

XP_022136047.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]7.2e-3285.87Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MA+VCRS+LTA G+R + GRTRTL  KTLNPMP  SSSSRG+ SVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_022933658.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]1.6e-39100Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_023531748.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]8.3e-3692.31Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSVLTATG+R + GRTRTL+RKTLNPMP SSSS+GLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

TrEMBL top hitse value%identityAlignment
A0A0A0K7P3 Uncharacterized protein1.4e-2575Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASV RS+LTA  +R + GRT++L  KTLNP+P  SSSSR   S +RIVSSLA VESLMPLH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1C4G8 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial3.5e-3285.87Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MA+VCRS+LTA G+R + GRTRTL  KTLNPMP  SSSSRG+ SVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1F5F6 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like7.8e-40100Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1GKU0 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like6.8e-2876.6Show/hide
Query:  MASVCRSVLTAT---GARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRS+L A    G+R + GRTRTL   TL P+P SSSSRG  SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTAT---GARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1I675 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial1.5e-2777.42Show/hide
Query:  MASVCRSVLTAT--GARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRS+L A   G+R + GRTRTL   TL P+P SSSSRG  SVSRI  SLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSVLTAT--GARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein1.0e-0433.33Show/hide
Query:  RTRTLVRKTLNPMPGSSSSRGLTSVS---RIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        +T   +    +P+  SS S   + ++   R+   L+   S++PLHSA+ASARL S ++V+S  W  + +G + PL
Subjt:  RTRTLVRKTLNPMPGSSSSRGLTSVS---RIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT1G70350.1 unknown protein1.4e-0449.21Show/hide
Query:  GSSSS-----RGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        GSSSS     R LT  SR+   L+   SL+PLHS  ASA L S +++ +  WS LSEGFA+ L
Subjt:  GSSSS-----RGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT3G13674.1 unknown protein1.4e-0440.68Show/hide
Query:  PGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        P S++S  L   SR+   L+   S++PLHSA+AS+RL S ++V+S  W  + +G + PL
Subjt:  PGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT4G39300.1 unknown protein2.2e-1852.58Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSS------SRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS CRS L A G+R +  R+RT+ +K+LN  P ++S      S+ +   SR++S+L +VE+++PLHSAVASARL+S IA DS CWS LS+G ATPL
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSS------SRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT4G39300.2 unknown protein5.9e-1648.96Show/hide
Query:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSS------SRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP
        MAS CRS L A G+R +  R+RT+ +K+LN  P ++S      S+ +   SR++S+L +VE+++PLHSAVASARL+S IA DS CWS LS+    P
Subjt:  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSS------SRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTGCAAGGTTCGTGACCGGACGGACCAGAACACTCGTTCGCAAAACCTTAAATCCAATGCCTGGTTCTTCTTC
CTCTAGGGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTG
CCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
TAGAGAAAAACCTGCGTTCCGCCTACTCCAGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTGCAAGGTTCGTGACCGGACGGACCAGAACA
CTCGTTCGCAAAACCTTAAATCCAATGCCTGGTTCTTCTTCCTCTAGGGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACT
CCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGACATAAAGACCGGG
AAGACAAATTTGAATCGACAATACAGTTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTA
AAACAAGGAAGAACTGTCTAGACAACTGCTTTTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGG
Protein sequenceShow/hide protein sequence
MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL