; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G011380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr11:6425439..6426071
RNA-Seq ExpressionCmoCh11G011380
SyntenyCmoCh11G011380
Gene Ontology termsNA
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022927949.1 uncharacterized protein LOC111434773 [Cucurbita moschata]1.1e-110100Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
        EESEQEEDSS
Subjt:  EESEQEEDSS

XP_022929949.1 uncharacterized protein LOC111436411 [Cucurbita moschata]6.2e-9588.57Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++L NRRKFEEFKVVSLNEECSAILKNKIPLK+K P SFTIPVSIGGKELGR LCDLGA+INLMPLSIYK+LGIGEAR TTVTLQLADRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKI+DILIQVDKFIF ADFIILDYE DHDVPIILG  FLK  RTLVDVYKGTITLRM  QKVEFNIND+MKY VVIEECSAVYELT+QP TEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
        EESEQEE+SS
Subjt:  EESEQEEDSS

XP_022951570.1 uncharacterized protein LOC111454344 [Cucurbita moschata]1.7e-9288.73Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++LTNRRKFEEFKVVSLNEECSAILKNKIPLK+K P SFTIPVSIGGKELGR LCDLGASINLMPLSIYK+LGIGEAR TTVTLQLADRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECS-------AVYELTEQP
        TYPEGKI+DILIQVDKFIFPADFIILDYEADHDVPIILG  FLKT RTLVDVYKGTITLRMGDQKVEFNIND+MKY  VIEECS       +VYELTEQP
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECS-------AVYELTEQP

Query:  ATEE
        ATEE
Subjt:  ATEE

XP_023521781.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo]7.4e-9688.1Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++LTNRRKFEEFKVV LNEECSAILKNKIPLK+K P SFTIP+SIGGK+LGR LCDLG+SINLMPLSIYK+LGIGEAR TTVTLQLADRS 
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKI+DILIQVDKF FPADFIILDYEADHDVPIILG  FLKT RTLVDVYKGTITLRMGDQKVEFNIND+MKY  V +ECSAVYELTEQPATEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
         ES QEEDSS
Subjt:  EESEQEEDSS

XP_023522102.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo]6.7e-9789.05Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++LTNRRKFEEFKVV LNEECSAILKNKIPLK+K P SFTIP+SIGGK+LGR LCDLG+SINLMPLSIYK+LGIGEAR TTVTLQLADRS 
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKI+DILIQVDKFIFPADFIILDYEADHDVPIILG  FLKT RTLVDVYKGTITLRMGDQKVEFNIND+MKY  V EECSAVYELTEQPATEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
         ES QEEDSS
Subjt:  EESEQEEDSS

TrEMBL top hitse value%identityAlignment
A0A6J1EJF1 uncharacterized protein LOC1114347735.1e-111100Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
        EESEQEEDSS
Subjt:  EESEQEEDSS

A0A6J1EQ90 uncharacterized protein LOC1114364113.0e-9588.57Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++L NRRKFEEFKVVSLNEECSAILKNKIPLK+K P SFTIPVSIGGKELGR LCDLGA+INLMPLSIYK+LGIGEAR TTVTLQLADRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKI+DILIQVDKFIF ADFIILDYE DHDVPIILG  FLK  RTLVDVYKGTITLRM  QKVEFNIND+MKY VVIEECSAVYELT+QP TEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
        EESEQEE+SS
Subjt:  EESEQEEDSS

A0A6J1EXR9 uncharacterized protein LOC1114392523.8e-9084.76Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++LTNRRKFEEFKVVSLNEE +AILKNKIPLK+K P S TIPVSIGGKELGR LCDL ASINLMPLSIYK+LGIGEAR T VT QL DRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        TYPEGKI+DILIQV+KFIFPADFIILDYEADHDVPIILG  FLKT RTLVDVYKGTITLRMG+QKVEF IND+MKY    EECSA+Y+LTEQ ATEEWDD
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
         +SEQEEDSS
Subjt:  EESEQEEDSS

A0A6J1GJ68 uncharacterized protein LOC1114543448.2e-9388.73Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        MPNYVKFLK++LTNRRKFEEFKVVSLNEECSAILKNKIPLK+K P SFTIPVSIGGKELGR LCDLGASINLMPLSIYK+LGIGEAR TTVTLQLADRSI
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECS-------AVYELTEQP
        TYPEGKI+DILIQVDKFIFPADFIILDYEADHDVPIILG  FLKT RTLVDVYKGTITLRMGDQKVEFNIND+MKY  VIEECS       +VYELTEQP
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECS-------AVYELTEQP

Query:  ATEE
        ATEE
Subjt:  ATEE

A0A6J1H7K8 uncharacterized protein LOC1114611673.3e-8679.52Show/hide
Query:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI
        M NYVKFLK++LTNRRKFEEFKVV LNEECSAILKNKIPLK+K P SFTIP+SIGGK+LGR LCDLG+SINLMPLSIYK+LGIGEAR TTVTLQLADRS 
Subjt:  MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSI

Query:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD
        T+PEGKI+DILIQVDKFIFPADFIILDYEADHDVP ILG  FLKT RTLVDV+KGTI LRM DQ++EF++NDNMKY  V+EECSA+Y+L E  AT+ W  
Subjt:  TYPEGKIKDILIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDD

Query:  EESEQEEDSS
         + +QEEDSS
Subjt:  EESEQEEDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAATTATGTGAAGTTCCTGAAGAATTTACTCACTAATAGAAGGAAGTTTGAAGAATTTAAGGTAGTGTCATTAAATGAAGAGTGCAGTGCAATATTGAAGAACAA
GATCCCACTAAAGAAGAAATATCCTAGATCGTTCACTATTCCTGTATCAATTGGAGGAAAGGAACTAGGAAGAACATTATGTGACTTGGGAGCAAGCATCAACTTAATGC
CTCTATCTATTTACAAGGAGTTGGGGATTGGAGAGGCTAGATCGACTACAGTCACCTTACAACTAGCCGATAGGTCCATCACTTATCCTGAAGGAAAGATTAAGGACATC
TTAATTCAAGTTGACAAATTCATATTTCCTGCAGATTTTATCATTTTAGATTATGAAGCCGATCATGATGTTCCAATTATTTTGGGGGGGGCATTTTTAAAGACCGAAAG
AACACTAGTAGATGTCTACAAAGGAACCATCACGTTAAGAATGGGTGACCAAAAAGTTGAATTTAATATCAATGACAACATGAAATATCTAGTAGTGATAGAAGAATGCT
CAGCCGTGTATGAATTGACAGAACAACCAGCGACCGAGGAATGGGATGATGAGGAAAGCGAGCAGGAAGAAGACAGCAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAATTATGTGAAGTTCCTGAAGAATTTACTCACTAATAGAAGGAAGTTTGAAGAATTTAAGGTAGTGTCATTAAATGAAGAGTGCAGTGCAATATTGAAGAACAA
GATCCCACTAAAGAAGAAATATCCTAGATCGTTCACTATTCCTGTATCAATTGGAGGAAAGGAACTAGGAAGAACATTATGTGACTTGGGAGCAAGCATCAACTTAATGC
CTCTATCTATTTACAAGGAGTTGGGGATTGGAGAGGCTAGATCGACTACAGTCACCTTACAACTAGCCGATAGGTCCATCACTTATCCTGAAGGAAAGATTAAGGACATC
TTAATTCAAGTTGACAAATTCATATTTCCTGCAGATTTTATCATTTTAGATTATGAAGCCGATCATGATGTTCCAATTATTTTGGGGGGGGCATTTTTAAAGACCGAAAG
AACACTAGTAGATGTCTACAAAGGAACCATCACGTTAAGAATGGGTGACCAAAAAGTTGAATTTAATATCAATGACAACATGAAATATCTAGTAGTGATAGAAGAATGCT
CAGCCGTGTATGAATTGACAGAACAACCAGCGACCGAGGAATGGGATGATGAGGAAAGCGAGCAGGAAGAAGACAGCAGCTAA
Protein sequenceShow/hide protein sequence
MPNYVKFLKNLLTNRRKFEEFKVVSLNEECSAILKNKIPLKKKYPRSFTIPVSIGGKELGRTLCDLGASINLMPLSIYKELGIGEARSTTVTLQLADRSITYPEGKIKDI
LIQVDKFIFPADFIILDYEADHDVPIILGGAFLKTERTLVDVYKGTITLRMGDQKVEFNINDNMKYLVVIEECSAVYELTEQPATEEWDDEESEQEEDSS