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CmoCh11G011470 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011470
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmo_Chr11:6516776..6517591
RNA-Seq ExpressionCmoCh11G011470
SyntenyCmoCh11G011470
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8676583.1 rhodanese-like domain-containing protein 4A [Hibiscus syriacus]2.2e-4868.13Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQ+RLQTL GELESMKM E ESVSDYI RVQ VVNQL RN+E L + R++EKILRSLT+NFENVVC IEESKDL   TVDELAGS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QRKKKEETLDQAVQTKHQSKMKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVKED
        Q KKK    ++  + + QSK KRYS  KIF+VE        MVVE  EMV VVKA VMK TIRR+D++A QIGV EDAV E+
Subjt:  QRKKKEETLDQAVQTKHQSKMKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVKED

KAE8702390.1 hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus]8.6e-4556.88Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG +RVKQVRLQTL GELES+K+KELESVSDYITRVQTVVNQLNRN E L E R+VEKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QR  KKKEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

KAE8705809.1 hypothetical protein F3Y22_tig00110418pilonHSYRG00346 [Hibiscus syriacus]1.9e-4456.88Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQVRLQTL  ELES+KMKELESVSDYITRVQTVVNQLNRN E L E R++EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAA----VMKDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QR  KKKEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAA----VMKDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

KAE8721174.1 hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]1.3e-4557.8Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLNRN E L E R+VEKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QR  KKKEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

KAE8732752.1 hypothetical protein F3Y22_tig00001732pilonHSYRG00018 [Hibiscus syriacus]1.5e-4456.88Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLN N E L E R+VEKILRSLT+NFENVVC IEESKDLAT T++EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QRKK--KEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QRKK  KEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QRKK--KEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

TrEMBL top hitse value%identityAlignment
A0A6A2XLA3 Rhodanese-like domain-containing protein 4A1.1e-4868.13Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQ+RLQTL GELESMKM E ESVSDYI RVQ VVNQL RN+E L + R++EKILRSLT+NFENVVC IEESKDL   TVDELAGS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QRKKKEETLDQAVQTKHQSKMKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVKED
        Q KKK    ++  + + QSK KRYS  KIF+VE        MVVE  EMV VVKA VMK TIRR+D++A QIGV EDAV E+
Subjt:  QRKKKEETLDQAVQTKHQSKMKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVKED

A0A6A3AD07 Uncharacterized protein4.2e-4556.88Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG +RVKQVRLQTL GELES+K+KELESVSDYITRVQTVVNQLNRN E L E R+VEKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QR  KKKEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

A0A6A3ASE2 Uncharacterized protein9.3e-4556.88Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQVRLQTL  ELES+KMKELESVSDYITRVQTVVNQLNRN E L E R++EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAA----VMKDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QR  KKKEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAA----VMKDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

A0A6A3BX58 Uncharacterized protein6.4e-4657.8Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLNRN E L E R+VEKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QR  KKKEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QR--KKKEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

A0A6A3CZT6 Uncharacterized protein7.1e-4556.88Show/hide
Query:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE
        GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLN N E L E R+VEKILRSLT+NFENVVC IEESKDLAT T++EL GS EAHE
Subjt:  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHE

Query:  QRKK--KEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND
        QRKK  KEETL+QA+QTK   K ++    + F+ +             +         +  +++      +   R R  R+    +E     + GHYA D
Subjt:  QRKK--KEETLDQAVQTKHQSKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSRAKQIGVEEDAVKEDGHYAND

Query:  CNSDKCYNCGRVRHFASD
        CNSDKCYNCG+V HFA D
Subjt:  CNSDKCYNCGRVRHFASD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGTGGTCGAAGAAGGTTTCGAAGAACCATAAGATACCACGGGTTATACGGCGACATAAAACAAGGCGTTAAAAGAGGAAAAGTATTCAAAGGAACCGACCGAGT
CAAGCAAGTGCGTCTCCAAACTCTTCATGGCGAGTTGGAGAGCATGAAGATGAAGGAGTTAGAAAGTGTATCCGACTACATCACACGTGTACAGACCGTGGTAAACCAAC
TCAACCGAAACGAAGAAATGTTACCCGAGACGCGGATTGTGGAGAAGATTTTGCGGTCATTAACCAATAACTTTGAGAATGTTGTATGTACGATAGAAGAGTCAAAGGAC
CTAGCGACGTTCACGGTCGATGAGCTCGCCGGTTCTCACGAGGCACACGAGCAACGTAAGAAGAAGGAGGAAACACTTGATCAAGCAGTTCAAACCAAGCATCAATCAAA
GATGAAAAGGTACTCTACTCTCAAAATTTTCAAGGTAGAGGTTGTAGTCGTGGAAGCCGCGGAAATGGTCGTGGAAGCTGCGGAAATGGTCAAGGTGGTCAAGGCAGCAG
TAATGAAGGATACTATAAGGAGAAGAGATAGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAGTCAAAGAAGATGGTCACTATGCGAATGATTGTAACTCCGACAAA
TGTTACAATTGTGGCAGAGTGAGACATTTCGCAAGCGATTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGTGGTCGAAGAAGGTTTCGAAGAACCATAAGATACCACGGGTTATACGGCGACATAAAACAAGGCGTTAAAAGAGGAAAAGTATTCAAAGGAACCGACCGAGT
CAAGCAAGTGCGTCTCCAAACTCTTCATGGCGAGTTGGAGAGCATGAAGATGAAGGAGTTAGAAAGTGTATCCGACTACATCACACGTGTACAGACCGTGGTAAACCAAC
TCAACCGAAACGAAGAAATGTTACCCGAGACGCGGATTGTGGAGAAGATTTTGCGGTCATTAACCAATAACTTTGAGAATGTTGTATGTACGATAGAAGAGTCAAAGGAC
CTAGCGACGTTCACGGTCGATGAGCTCGCCGGTTCTCACGAGGCACACGAGCAACGTAAGAAGAAGGAGGAAACACTTGATCAAGCAGTTCAAACCAAGCATCAATCAAA
GATGAAAAGGTACTCTACTCTCAAAATTTTCAAGGTAGAGGTTGTAGTCGTGGAAGCCGCGGAAATGGTCGTGGAAGCTGCGGAAATGGTCAAGGTGGTCAAGGCAGCAG
TAATGAAGGATACTATAAGGAGAAGAGATAGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAGTCAAAGAAGATGGTCACTATGCGAATGATTGTAACTCCGACAAA
TGTTACAATTGTGGCAGAGTGAGACATTTCGCAAGCGATTATTGA
Protein sequenceShow/hide protein sequence
MGGGRRRFRRTIRYHGLYGDIKQGVKRGKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKD
LATFTVDELAGSHEAHEQRKKKEETLDQAVQTKHQSKMKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVKEDGHYANDCNSDK
CYNCGRVRHFASDY