; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G011830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCmo_Chr11:6870291..6882623
RNA-Seq ExpressionCmoCh11G011830
SyntenyCmoCh11G011830
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588487.1 hypothetical protein SDJN03_17052, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4991.41Show/hide
Query:  PLAGTLHRRSSFVSAATSRQHRPCLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDV--AAAA
        PLAGTLHRRSSFVSAATSRQH+  LSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDV  AAAA
Subjt:  PLAGTLHRRSSFVSAATSRQHRPCLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDV--AAAA

Query:  KIGKLLGERLLLKGIPAVCVHLKREQKY
        KIGK      LLKGIPAVCVHLKREQKY
Subjt:  KIGKLLGERLLLKGIPAVCVHLKREQKY

RVW73295.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.0e-5136.44Show/hide
Query:  EGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN---------------------------
        EGHYAD  NQR  R DS+  HLAE FNTSC ++GP+AADW LDTGASAHMT DPSILD SKNY GKD VIVGN                           
Subjt:  EGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN---------------------------

Query:  ----------RH---------------------------------------------------------------------------------PC-----
                  RH                                                                                 PC     
Subjt:  ----------RH---------------------------------------------------------------------------------PC-----

Query:  ---------------------------------------PLPTL-----------------------------------------------VDTSRAGSA
                                               PL +L                                               VDTS AGS+
Subjt:  ---------------------------------------PLPTL-----------------------------------------------VDTSRAGSA

Query:  LPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTN
        LPP  S P SI+   D SSSLGSHPMITRAKA                               FKSAAKNPAW+AAMDEE++ALQQN TW LVP P NTN
Subjt:  LPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTN

Query:  IVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        IVGSKW+FR K L DG VER KA LVAKGYTQVPGLDYTDTFSP+VKATT
Subjt:  IVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

RVW80531.1 putative mitochondrial protein [Vitis vinifera]1.5e-5756.85Show/hide
Query:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLPTLVDTSRAGS
        RPP CQI R EGHYADR NQR  R DS+ AHLA+ FNTSC ++GP AADW LDT ASAHMT DPSILD SKNY GKD VIVGN    P+      +  GS
Subjt:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLPTLVDTSRAGS

Query:  ALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKAEFKSAAKN---PAWVAAMD---EEIRALQQNDT------------W------------TLVPHPANT
        +LPP  S P SI+  VD SSSLGSHPMITRAKA            +W A +D     +  L Q D+            W             LVP P NT
Subjt:  ALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKAEFKSAAKN---PAWVAAMD---EEIRALQQNDT------------W------------TLVPHPANT

Query:  NIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVK
        NIVGSKW+FR K  SDG VER KA LVAKGYTQVPGLDYT+TFSP+VK
Subjt:  NIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVK

RVX01763.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.3e-5538.32Show/hide
Query:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN-----------------
        RPP CQI   EGHYADR NQR  R D T AHLAE FNTSC ++GP+AADW LDTGASAHMT DPSILD SKNY GKD +IVGN                 
Subjt:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN-----------------

Query:  --------------------------------------------------------------------------------RH------------------
                                                                                        RH                  
Subjt:  --------------------------------------------------------------------------------RH------------------

Query:  ---------------PCPL------------------------------------------------PTL------------VDTSRAGSALPPSTSDPT
                       P PL                                                P L            VDTS AGS+LPP  S P 
Subjt:  ---------------PCPL------------------------------------------------PTL------------VDTSRAGSALPPSTSDPT

Query:  SIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFR
        SI+   D SSSLGSHPMITRAKA                               FKSAAKNPAW+AAMDEE++ALQQN TW LVP P NTNIVGSKW+FR
Subjt:  SIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFR

Query:  IKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
         K L DG VER KA LVAKGYT VPGLDYTD FSP+VKATT
Subjt:  IKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

RVX04731.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.2e-6445.94Show/hide
Query:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLP----------
        RPP CQI R EGHYADR NQR  R DS+ AHLAE FNTSC ++GP+AADW LDTGASAHMT DPS LD SKNY GKD VIVGN    P+           
Subjt:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLP----------

Query:  ---------------------------------------------------TLVDTSRA-----------------------------------------
                                                           T     RA                                         
Subjt:  ---------------------------------------------------TLVDTSRA-----------------------------------------

Query:  ----GSALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLV
            GS+LPP  S P SI+   D SSSLGSHPMITRAKA                               FKSAAKNPAW+AAMDEE++ALQQN TW LV
Subjt:  ----GSALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLV

Query:  PHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        P P NTNIVGSKW+FR K L DG VER KA LVAKGYTQVPGLDYTDTFSP+VKATT
Subjt:  PHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

TrEMBL top hitse value%identityAlignment
A0A2N9HRT6 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-6151.6Show/hide
Query:  KASIDQDCRPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLP--
        +++  Q  RPP CQI R EGHYADR +QR  R DS+ AHLAE F+TSC ++GP+A+DW LDTGASAHMT DPS LD   NYT KD VIVGN    P+   
Subjt:  KASIDQDCRPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLP--

Query:  --TLVDTSRAGS-----------------------------------ALPPSTSDPTSIKP----IVDSSSLGS----------HPMITRAKAEFKSAAK
           +    R G                                    +LP S S   SI+     IVDSSS  S            +++     FKSAAK
Subjt:  --TLVDTSRAGS-----------------------------------ALPPSTSDPTSIKP----IVDSSSLGS----------HPMITRAKAEFKSAAK

Query:  NPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        NPAW+AAMDEE++ALQQN TW LVP  ANTNIVGSKW+FR K L DG +ER KA LVAKGYTQVPGLDYTDTFSP++KATT
Subjt:  NPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

A0A438GM61 Retrovirus-related Pol polyprotein from transposon RE12.9e-5136.44Show/hide
Query:  EGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN---------------------------
        EGHYAD  NQR  R DS+  HLAE FNTSC ++GP+AADW LDTGASAHMT DPSILD SKNY GKD VIVGN                           
Subjt:  EGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN---------------------------

Query:  ----------RH---------------------------------------------------------------------------------PC-----
                  RH                                                                                 PC     
Subjt:  ----------RH---------------------------------------------------------------------------------PC-----

Query:  ---------------------------------------PLPTL-----------------------------------------------VDTSRAGSA
                                               PL +L                                               VDTS AGS+
Subjt:  ---------------------------------------PLPTL-----------------------------------------------VDTSRAGSA

Query:  LPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTN
        LPP  S P SI+   D SSSLGSHPMITRAKA                               FKSAAKNPAW+AAMDEE++ALQQN TW LVP P NTN
Subjt:  LPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTN

Query:  IVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        IVGSKW+FR K L DG VER KA LVAKGYTQVPGLDYTDTFSP+VKATT
Subjt:  IVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

A0A438H886 Putative mitochondrial protein7.1e-5856.85Show/hide
Query:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLPTLVDTSRAGS
        RPP CQI R EGHYADR NQR  R DS+ AHLA+ FNTSC ++GP AADW LDT ASAHMT DPSILD SKNY GKD VIVGN    P+      +  GS
Subjt:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLPTLVDTSRAGS

Query:  ALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKAEFKSAAKN---PAWVAAMD---EEIRALQQNDT------------W------------TLVPHPANT
        +LPP  S P SI+  VD SSSLGSHPMITRAKA            +W A +D     +  L Q D+            W             LVP P NT
Subjt:  ALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKAEFKSAAKN---PAWVAAMD---EEIRALQQNDT------------W------------TLVPHPANT

Query:  NIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVK
        NIVGSKW+FR K  SDG VER KA LVAKGYTQVPGLDYT+TFSP+VK
Subjt:  NIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVK

A0A438IYJ9 Retrovirus-related Pol polyprotein from transposon RE11.1e-5538.32Show/hide
Query:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN-----------------
        RPP CQI   EGHYADR NQR  R D T AHLAE FNTSC ++GP+AADW LDTGASAHMT DPSILD SKNY GKD +IVGN                 
Subjt:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGN-----------------

Query:  --------------------------------------------------------------------------------RH------------------
                                                                                        RH                  
Subjt:  --------------------------------------------------------------------------------RH------------------

Query:  ---------------PCPL------------------------------------------------PTL------------VDTSRAGSALPPSTSDPT
                       P PL                                                P L            VDTS AGS+LPP  S P 
Subjt:  ---------------PCPL------------------------------------------------PTL------------VDTSRAGSALPPSTSDPT

Query:  SIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFR
        SI+   D SSSLGSHPMITRAKA                               FKSAAKNPAW+AAMDEE++ALQQN TW LVP P NTNIVGSKW+FR
Subjt:  SIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFR

Query:  IKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
         K L DG VER KA LVAKGYT VPGLDYTD FSP+VKATT
Subjt:  IKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

A0A438J6Z9 Retrovirus-related Pol polyprotein from transposon RE13.0e-6445.94Show/hide
Query:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLP----------
        RPP CQI R EGHYADR NQR  R DS+ AHLAE FNTSC ++GP+AADW LDTGASAHMT DPS LD SKNY GKD VIVGN    P+           
Subjt:  RPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHSKNYTGKDFVIVGNRHPCPLP----------

Query:  ---------------------------------------------------TLVDTSRA-----------------------------------------
                                                           T     RA                                         
Subjt:  ---------------------------------------------------TLVDTSRA-----------------------------------------

Query:  ----GSALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLV
            GS+LPP  S P SI+   D SSSLGSHPMITRAKA                               FKSAAKNPAW+AAMDEE++ALQQN TW LV
Subjt:  ----GSALPPSTSDPTSIKPIVD-SSSLGSHPMITRAKA------------------------------EFKSAAKNPAWVAAMDEEIRALQQNDTWTLV

Query:  PHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        P P NTNIVGSKW+FR K L DG VER KA LVAKGYTQVPGLDYTDTFSP+VKATT
Subjt:  PHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.4e-1240.51Show/hide
Query:  AWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        +W  A++ E+ A + N+TWT+   P N NIV S+W+F +K    G   R+KA LVA+G+TQ   +DY +TF+P+ + ++
Subjt:  AWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-2836.63Show/hide
Query:  MYVMVCTRPDITHAVGVVA------------------------------------IMQCFVDADLSEDVESSKSTSGYIYTIDGTTISWMSRLQKCIALS
        MY MVCTRPDI HAVGVV+                                    I++ + DAD++ D+++ KS++GY++T  G  ISW S+LQKC+ALS
Subjt:  MYVMVCTRPDITHAVGVVA------------------------------------IMQCFVDADLSEDVESSKSTSGYIYTIDGTTISWMSRLQKCIALS

Query:  SIETEYVAIAEAGKEVIWMTNYLEELCKKQHEKILYTDR--------------------VPYNW---LVEEGDMCLKKIDSANNPADMLTKCVDVGKLKL
        + E EY+A  E GKE+IW+  +L+EL   Q E ++Y D                     V Y+W   +V++  + + KI +  NPADMLTK V   K +L
Subjt:  SIETEYVAIAEAGKEVIWMTNYLEELCKKQHEKILYTDR--------------------VPYNW---LVEEGDMCLKKIDSANNPADMLTKCVDVGKLKL

Query:  CK
        CK
Subjt:  CK

P92520 Uncharacterized mitochondrial protein AtMg008203.7e-1950Show/hide
Query:  TRAKAEFKS---AAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        T  K E KS   A K+P W  AM EE+ AL +N TW LVP P N NI+G KW+F+ K  SDG ++R KA LVAKG+ Q  G+ + +T+SP+V+  T
Subjt:  TRAKAEFKS---AAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-1839.75Show/hide
Query:  PLPTLVDTSRAGSALPPS--TSDPTSIKPIVDSSS---LGSHPMITRAKAEF----------------------KSAAKNPAWVAAMDEEIRALQQNDTW
        P PT   +S + S  PPS     P  +  IV++++   L +H M TRAKA                          A K+  W  AM  EI A   N TW
Subjt:  PLPTLVDTSRAGSALPPS--TSDPTSIKPIVDSSS---LGSHPMITRAKAEF----------------------KSAAKNPAWVAAMDEEIRALQQNDTW

Query:  TLV-PHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
         LV P P++  IVG +W+F  K  SDG + R+KA LVAKGY Q PGLDY +TFSP++K+T+
Subjt:  TLV-PHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.7e-1738.26Show/hide
Query:  TSRAGSALPPSTSDPTSIKPIVDSSSLGSHPMITRAKAEFK----------------------SAAKNPAWVAAMDEEIRALQQNDTWTLV-PHPANTNI
        +S +   LPP    P  I+ +   + + +H M TRAK   +                       A K+  W  AM  EI A   N TW LV P P +  I
Subjt:  TSRAGSALPPSTSDPTSIKPIVDSSSLGSHPMITRAKAEFK----------------------SAAKNPAWVAAMDEEIRALQQNDTWTLV-PHPANTNI

Query:  VGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        VG +W+F  K  SDG + R+KA LVAKGY Q PGLDY +TFSP++K+T+
Subjt:  VGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein4.1e-0526.61Show/hide
Query:  LAGTLHRRSSFVSAATSRQHRPCLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAKIG
        ++  + ++ SFV AA +R+ R   + R             R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D  A   IG
Subjt:  LAGTLHRRSSFVSAATSRQHRPCLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAKIG

Query:  KLLGERLLLKGIPAVCVHLKREQK
        KL+ ER +   + AV    ++ ++
Subjt:  KLLGERLLLKGIPAVCVHLKREQK

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.1e-1844.79Show/hide
Query:  ITRAK--AEFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        I +AK  + +  A +   W  AMD+EI A++   TW +   P N   +G KW+++IK  SDG +ER+KA LVAKGYTQ  G+D+ +TFSP+ K T+
Subjt:  ITRAK--AEFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT

AT5G27820.1 Ribosomal L18p/L5e family protein3.5e-3376.84Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKY
        MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+Y
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKY

ATMG00810.1 DNA/RNA polymerases superfamily protein1.0e-0333.87Show/hide
Query:  MQCFVDADLSEDVESSKSTSGYIYTIDGTTISWMSRLQKCIALSSIETEYVAIAEAGKEVIW
        +Q F D+D +    + +ST+G+   +    ISW ++ Q  ++ SS ETEY A+A    E+ W
Subjt:  MQCFVDADLSEDVESSKSTSGYIYTIDGTTISWMSRLQKCIALSSIETEYVAIAEAGKEVIW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.6e-2050Show/hide
Query:  TRAKAEFKS---AAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT
        T  K E KS   A K+P W  AM EE+ AL +N TW LVP P N NI+G KW+F+ K  SDG ++R KA LVAKG+ Q  G+ + +T+SP+V+  T
Subjt:  TRAKAEFKS---AAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRIKNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGTTATGGTCTGCACTAGACCTGATATAACACATGCCGTGGGAGTTGTAGCAATTATGCAATGTTTTGTGGATGCTGATCTGAGTGAAGATGTAGAGTCTAGCAA
GAGCACATCTGGATATATCTATACTATAGATGGAACAACAATAAGTTGGATGTCTAGGCTTCAGAAATGCATTGCTCTTTCATCTATTGAGACTGAGTACGTGGCAATAG
CTGAAGCTGGAAAGGAGGTGATATGGATGACAAACTACCTAGAAGAATTGTGCAAAAAGCAGCACGAGAAGATTCTTTATACAGATAGAGTGCCATACAATTGGCTAGTG
GAAGAAGGTGATATGTGTTTGAAGAAGATAGATAGTGCAAATAATCCAGCAGACATGTTGACAAAATGTGTTGATGTTGGAAAGTTGAAGTTGTGCAAAGCCTCAATTGA
TCAGGATTGTCGACCACCTCACTGTCAAATATACCGCAAAGAGGGCCATTATGCTGACCGCTACAACCAACGGTGTGTTCGACCTGATTCTACTCATGCTCACCTTGCTG
AAGTCTTCAACACGTCCTGTTTTATTGCTGGACCCGATGCTGCTGATTGGTCTCTGGATACTGGGGCTTCAGCCCATATGACCGCCGACCCATCTATTTTGGATCACTCT
AAAAATTACACGGGTAAGGACTTTGTGATCGTAGGAAACAGGCATCCCTGCCCATTACCCACATTGGTTGACACTTCTCGTGCAGGTTCTGCTTTGCCACCCTCGACTTC
TGATCCAACCTCTATTAAACCTATTGTTGATTCCTCTTCTTTGGGCTCTCATCCTATGATCACACGAGCCAAAGCTGAATTCAAATCTGCGGCTAAGAATCCTGCTTGGG
TTGCTGCCATGGATGAAGAAATTCGAGCTTTACAACAAAATGATACTTGGACTTTGGTTCCTCACCCTGCCAACACCAACATCGTGGGCTCTAAATGGATGTTTCGTATT
AAAAATTTGTCTGATGGATTCGTCGAGCGTTTCAAGGCTCATCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGATTACACTGACACTTTCAGTCCAATTGTCAA
AGCTACCACTCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCGACCCTGTCTTTCGTCGAGAGTAAGGGAGATGGTGA
TTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCATTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCTGAAACG
GCCACCGTTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCAAAGATCGGGAAATTGTTGGGAGAGAG
GCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGTTATGGTCTGCACTAGACCTGATATAACACATGCCGTGGGAGTTGTAGCAATTATGCAATGTTTTGTGGATGCTGATCTGAGTGAAGATGTAGAGTCTAGCAA
GAGCACATCTGGATATATCTATACTATAGATGGAACAACAATAAGTTGGATGTCTAGGCTTCAGAAATGCATTGCTCTTTCATCTATTGAGACTGAGTACGTGGCAATAG
CTGAAGCTGGAAAGGAGGTGATATGGATGACAAACTACCTAGAAGAATTGTGCAAAAAGCAGCACGAGAAGATTCTTTATACAGATAGAGTGCCATACAATTGGCTAGTG
GAAGAAGGTGATATGTGTTTGAAGAAGATAGATAGTGCAAATAATCCAGCAGACATGTTGACAAAATGTGTTGATGTTGGAAAGTTGAAGTTGTGCAAAGCCTCAATTGA
TCAGGATTGTCGACCACCTCACTGTCAAATATACCGCAAAGAGGGCCATTATGCTGACCGCTACAACCAACGGTGTGTTCGACCTGATTCTACTCATGCTCACCTTGCTG
AAGTCTTCAACACGTCCTGTTTTATTGCTGGACCCGATGCTGCTGATTGGTCTCTGGATACTGGGGCTTCAGCCCATATGACCGCCGACCCATCTATTTTGGATCACTCT
AAAAATTACACGGGTAAGGACTTTGTGATCGTAGGAAACAGGCATCCCTGCCCATTACCCACATTGGTTGACACTTCTCGTGCAGGTTCTGCTTTGCCACCCTCGACTTC
TGATCCAACCTCTATTAAACCTATTGTTGATTCCTCTTCTTTGGGCTCTCATCCTATGATCACACGAGCCAAAGCTGAATTCAAATCTGCGGCTAAGAATCCTGCTTGGG
TTGCTGCCATGGATGAAGAAATTCGAGCTTTACAACAAAATGATACTTGGACTTTGGTTCCTCACCCTGCCAACACCAACATCGTGGGCTCTAAATGGATGTTTCGTATT
AAAAATTTGTCTGATGGATTCGTCGAGCGTTTCAAGGCTCATCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGATTACACTGACACTTTCAGTCCAATTGTCAA
AGCTACCACTCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCGACCCTGTCTTTCGTCGAGAGTAAGGGAGATGGTGA
TTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCATTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCTGAAACG
GCCACCGTTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCAAAGATCGGGAAATTGTTGGGAGAGAG
GCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAA
GCTGCTTTGAAGTCACTGCCCAATATTATCTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGTGTCATACGAGCATTTTTGGGAAATAAACAATAATTAAG
AGTCAAAACATATGTTTTAGTCCCTAATTTCTCTTTAAATTTTGTTAGTTACAAATACTTAGTGAATTAGTAGAAATTGAGAGAAGACGCCTAAACATTAGGGACATTTA
GCCTGCTTCATTAAGATCTGAGATACACATCGGTTGGGGAGAAGAATGAAGCCTTCTTTATATATAAAGGTGTGTAAACCTCTCCCTAGCATATGCATTTTAAAACCTTG
AGGGGAAGCGGTCAGGGAGGATAACGAAGTATTCTTTATAAAGATGTGGAAACCTCTCCCTAGGATACCCG
Protein sequenceShow/hide protein sequence
MYVMVCTRPDITHAVGVVAIMQCFVDADLSEDVESSKSTSGYIYTIDGTTISWMSRLQKCIALSSIETEYVAIAEAGKEVIWMTNYLEELCKKQHEKILYTDRVPYNWLV
EEGDMCLKKIDSANNPADMLTKCVDVGKLKLCKASIDQDCRPPHCQIYRKEGHYADRYNQRCVRPDSTHAHLAEVFNTSCFIAGPDAADWSLDTGASAHMTADPSILDHS
KNYTGKDFVIVGNRHPCPLPTLVDTSRAGSALPPSTSDPTSIKPIVDSSSLGSHPMITRAKAEFKSAAKNPAWVAAMDEEIRALQQNDTWTLVPHPANTNIVGSKWMFRI
KNLSDGFVERFKAHLVAKGYTQVPGLDYTDTFSPIVKATTPLAGTLHRRSSFVSAATSRQHRPCLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSET
ATVASAASSQEKALRPSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYIMVRSKLLLTL