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CmoCh11G011970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G011970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmo_Chr11:7044867..7045184
RNA-Seq ExpressionCmoCh11G011970
SyntenyCmoCh11G011970
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3643966.1 Pleiotropic drug resistance protein 1 [Capsicum annuum]4.0e-2664.71Show/hide
Query:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHT
        MKG MVVAR  KSGTL+TTA C+NMA V E AS+  LWHNRLG+MSAK +KML AK  LEG+K VD+  CE+ VM KQKRVSFT+ A+  KKVR +M+H 
Subjt:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHT

Query:  DL
        D+
Subjt:  DL

KAF3659213.1 putative disease resistance RPP13-like protein 3-like isoform X1 [Capsicum annuum]1.4e-1863.75Show/hide
Query:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKR
        ++G MVVAR  + GTLYTT GC+NM  V E A +S LWHNRLG++SAK +KML AKR LEG+KSVD+  CE+ VM KQKR
Subjt:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKR

KAF3680274.1 putative 50S ribosomal protein L18-like [Capsicum annuum]1.1e-1862.2Show/hide
Query:  GCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL
        GC+N+ +VTESAS S LW+NRLG+MSAK +KML AK  L+GLKSVD+  C++ VM KQKRVSF + ARE K+VR +M+HT++
Subjt:  GCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL

MUG03565.1 DDE-type integrase/transposase/recombinase [Bacillus tequilensis]7.8e-3071.57Show/hide
Query:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHT
        +KG MVVAR  KSGTLYTTAGC+NMAAV E AS S LWHNRLG+MS K +KMLVAK  LEGLKSVD+  CE+ VM KQKRVSFT+  RE KKVR +M+HT
Subjt:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHT

Query:  DL
        D+
Subjt:  DL

PHU15676.1 hypothetical protein BC332_16881 [Capsicum chinense]2.4e-2671.28Show/hide
Query:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVR
        +KG MVVAR  K GTLYTTAGC+NM  V E AS S LWHNRLG+MSAK +KMLVAKR LEG+K VD+  CE+YVM KQKRVSFT+ AR  KKVR
Subjt:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVR

TrEMBL top hitse value%identityAlignment
A0A2G3CAD5 Uncharacterized protein1.1e-2671.28Show/hide
Query:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVR
        +KG MVVAR  K GTLYTTAGC+NM  V E AS S LWHNRLG+MSAK +KMLVAKR LEG+K VD+  CE+YVM KQKRVSFT+ AR  KKVR
Subjt:  MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVR

A0A438DGG6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-1748.51Show/hide
Query:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD
        KGT V+AR  K+ TLY T+   +  AV ++++N+SLWH RLG+MS K +KML++K  L  LKS+D D CE++++ KQKRVSF +  R  K  + +++HTD
Subjt:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD

Query:  L
        L
Subjt:  L

A0A438JKL2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-1748.51Show/hide
Query:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD
        KG  V+AR  K+GTLY T+   +  AVT++++++SLWH RLG+MS K +KML++K  L  LKS+D D CE+ ++ KQK+VSF +  R LK  + +++HTD
Subjt:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD

Query:  L
        L
Subjt:  L

A0A5B7BAK4 Uncharacterized protein9.7e-1848.51Show/hide
Query:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD
        KG MV+AR  K GTLY T    +   + E+ S+S+LWH RLG+MS K +K+L +K  L+GLKSVD+D CE+ +  KQK+VSF++A R  K  + +++HTD
Subjt:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD

Query:  L
        +
Subjt:  L

A0A7N2M9V5 Uncharacterized protein4.8e-1747.52Show/hide
Query:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD
        KG  V+AR  K+GTLY T+   ++ AV ++++++SLWH RLG+MS K  KML++K  L  LKS+D D CE+ ++ KQK+VSF +  R LK  + +++HTD
Subjt:  KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTD

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCT
ATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATG
TTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCT
ATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATG
TTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA
Protein sequenceShow/hide protein sequence
MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDLEQG