; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G012060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGag/pol protein
Genome locationCmo_Chr11:7124761..7125405
RNA-Seq ExpressionCmoCh11G012060
SyntenyCmoCh11G012060
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]4.0e-8173.11Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANR  R+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQPS+SLRHEAIK+IY  RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISKK
        +  EANVA++K+
Subjt:  QTGEANVAISKK

KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-8072.51Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M +SIVQLLAS+KLNGDNY TWKSNLNTILV+DDL+F+LTEECP  P SNANR +R+AYDRWIKAN+KARVYILAS+SDVLAKKH+ + T KEI++SLKG
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMK+GTSVREHVLDMM+HFN+ E N   IDE +QVSFI+ SL KSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK
        +  EANVA +K
Subjt:  QTGEANVAISK

KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]9.8e-8072.17Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M +SIVQLL+SEKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P SNANR +R AYDRWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM SLKG
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMKEGTS+REHVLDMM+HFN+ E N   IDE +QVS I+ SLPKSF  F+ N  +NKIE+NLT LLNELQ +Q+L   K 
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISKK
        +  EANVA +K+
Subjt:  QTGEANVAISKK

KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-8173.46Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M + IVQLLASEKLN DNYTTWKSNLNTILV+DDL+FVLTEECP  P SNANR +R+AYDRWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SLKG
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRH+AIKYIY  RMKEGTS+REHVL MM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TNV +NKIE+NLT LLNELQ +Q+L   K 
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK
        +  EAN+A +K
Subjt:  QTGEANVAISK

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]2.1e-8272.17Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M+ S +QLLAS+KLNGDNY  WKSNLNTILVIDDL+FVLTEECPP P  NANR  RDAYDRW+KAN+KARVYILASIS+VL+KKH+ + T +EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        +FGQPS +L H+A+KY+YNCRMKEG+SVREHVL+MMVHFNVAE N+ V++E SQV FIM SLPKS+FQF+ N +MNKIEY+LT LLNELQ Y+SLL NKG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISKK
           EANVA + K
Subjt:  QTGEANVAISKK

TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein7.3e-8172.51Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M +SIVQLLAS+KLNGDNY TWKSNLNTILV+DDL+F+LTEECP  P SNANR +R+AYDRWIKAN+KARVYILAS+SDVLAKKH+ + T KEI++SLKG
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMK+GTSVREHVLDMM+HFN+ E N   IDE +QVSFI+ SL KSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK
        +  EANVA +K
Subjt:  QTGEANVAISK

A0A5A7TWX1 Gag/pol protein1.9e-8173.46Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M + IVQLLASEKLN DNYTTWKSNLNTILV+DDL+FVLTEECP  P SNANR +R+AYDRWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SLKG
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRH+AIKYIY  RMKEGTS+REHVL MM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TNV +NKIE+NLT LLNELQ +Q+L   K 
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK
        +  EAN+A +K
Subjt:  QTGEANVAISK

A0A5D3DL59 Gag/pol protein4.8e-8072.17Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M +SIVQLL+SEKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P SNANR +R AYDRWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM SLKG
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMKEGTS+REHVLDMM+HFN+ E N   IDE +QVS I+ SLPKSF  F+ N  +NKIE+NLT LLNELQ +Q+L   K 
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISKK
        +  EANVA +K+
Subjt:  QTGEANVAISKK

A0A6J1DWG6 uncharacterized protein LOC1110250211.0e-8272.17Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M+ S +QLLAS+KLNGDNY  WKSNLNTILVIDDL+FVLTEECPP P  NANR  RDAYDRW+KAN+KARVYILASIS+VL+KKH+ + T +EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        +FGQPS +L H+A+KY+YNCRMKEG+SVREHVL+MMVHFNVAE N+ V++E SQV FIM SLPKS+FQF+ N +MNKIEY+LT LLNELQ Y+SLL NKG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISKK
           EANVA + K
Subjt:  QTGEANVAISKK

E2GK51 Gag/pol protein (Fragment)1.9e-8173.11Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANR  R+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQPS+SLRHEAIK+IY  RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISKK
        +  EANVA++K+
Subjt:  QTGEANVAISKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTT
TGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTC
TAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGA
CATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGC
TGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTG
CTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTT
TGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTC
TAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGA
CATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGC
TGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTG
CTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA
Protein sequenceShow/hide protein sequence
MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLR
HEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKGQTGEANVAISKKLL