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CmoCh11G012150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationCmo_Chr11:7313112..7313574
RNA-Seq ExpressionCmoCh11G012150
SyntenyCmoCh11G012150
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5806660.1 putative photosystem antenna protein [Helianthus annuus]9.5e-1546.51Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL
        DGAN F   NPTQAEETYSMVTAN FW QI                             + G  LNLR   ++           ++ G   KISLMK   
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL

Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

KAG2275614.1 hypothetical protein Bca52824_058169 [Brassica carinata]1.4e-1352.43Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQ
        DGAN F   NPTQAEETYSMVTAN FW QI                            +  G   KISLMK   TLY LRRFY VETLFNGTL+L GR+Q
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQ

Query:  ERT
        E T
Subjt:  ERT

OMP13851.1 Photosynthetic reaction centre, L/M [Corchorus olitorius]8.0e-1451.46Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQ
        DGAN F   NPTQAEETYSMVTAN FW                               ++ G   KISLMK   TLY LRRFYPVETLFNGTL+L GR+Q
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQ

Query:  ERT
        E T
Subjt:  ERT

OTF84393.1 putative photosynthetic reaction centre, L/M, Photosystem antenna protein-like protein [Helianthus annuus]9.5e-1546.51Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL
        DGAN F   NPTQAEETYSMVTAN FW QI                             + G  LNLR   ++           ++ G   KISLMK   
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL

Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

OTF84537.1 putative photosynthetic reaction centre, L/M, Photosystem antenna protein-like protein [Helianthus annuus]9.5e-1546.51Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL
        DGAN F   NPTQAEETYSMVTAN FW QI                             + G  LNLR   ++           ++ G   KISLMK   
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL

Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

TrEMBL top hitse value%identityAlignment
A0A0E0JUB3 Ribosomal_S7 domain-containing protein2.5e-1343.18Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRR---DSYLDGGSSKISLMK
        DGAN F   NPTQAEETYSMVT N FW QI                             + G  LNLR   ++ Q+    +    + ++ G   +ISLMK
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRR---DSYLDGGSSKISLMK

Query:  IHLTLYYLRRFYPVETLFNGTLSLVGRNQERT
        I   LY LRRFY VETLFNGT  L GR+QE T
Subjt:  IHLTLYYLRRFYPVETLFNGTLSLVGRNQERT

A0A1R3L3E5 Photosynthetic reaction centre, L/M3.9e-1451.46Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQ
        DGAN F   NPTQAEETYSMVTAN FW                               ++ G   KISLMK   TLY LRRFYPVETLFNGTL+L GR+Q
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQ

Query:  ERT
        E T
Subjt:  ERT

A0A1Y3BWP9 Photosystem II D2 protein4.6e-1546.51Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL
        DGAN F   NPTQAEETYSMVTAN FW QI                             + G  LNLR   ++           ++ G   KISLMK   
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL

Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

A0A1Y3BX75 Putative photosynthetic reaction centre, L/M, Photosystem antenna protein-like protein4.6e-1546.51Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL
        DGAN F   NPTQAEETYSMVTAN FW QI                             + G  LNLR   ++           ++ G   KISLMK   
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI--------------------------CEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHL

Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

A0A803N321 Uncharacterized protein3.9e-1450Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLM-KIHLTLYYLRRFYPVETLFNGTLSLVGRN
        DGAN F   NPTQAEETYSMVTAN FW QI  EIR    +     +  +   LN      +G  + ++   + H  L +LRRFYPVETLFNGTL++ GR+
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLM-KIHLTLYYLRRFYPVETLFNGTLSLVGRN

Query:  QERT
        QE T
Subjt:  QERT

SwissProt top hitse value%identityAlignment
A9LYI1 Photosystem II CP43 reaction center protein3.7e-0682.76Show/hide
Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

Q0G9M3 Photosystem II CP43 reaction center protein1.7e-0686.21Show/hide
Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTLSL GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

Q3BAP4 Photosystem II CP43 reaction center protein1.3e-0686.21Show/hide
Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+LVGR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

Q3V538 Photosystem II CP43 reaction center protein3.7e-0682.76Show/hide
Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

Q70Y07 Photosystem II CP43 reaction center protein3.7e-0682.76Show/hide
Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFYPVETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT

Arabidopsis top hitse value%identityAlignment
ATCG00270.1 photosystem II reaction center protein D2.7e-0780Show/hide
Query:  DGANRFLPGNPTQAEETYSMVTANHFWYQI
        DGAN F   NPTQAEETYSMVTAN FW QI
Subjt:  DGANRFLPGNPTQAEETYSMVTANHFWYQI

ATCG00280.1 photosystem II reaction center protein C2.9e-0679.31Show/hide
Query:  TLYYLRRFYPVETLFNGTLSLVGRNQERT
        TLY LRRFY VETLFNGTL+L GR+QE T
Subjt:  TLYYLRRFYPVETLFNGTLSLVGRNQERT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGTACCAAATCTGTGAGGAAAT
CCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCAAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGCAAGATCAGCCTCATGA
AAATACACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGTTGGTCGTAACCAAGAAAGAACCCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGTACCAAATCTGTGAGGAAAT
CCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCAAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGCAAGATCAGCCTCATGA
AAATACACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGTTGGTCGTAACCAAGAAAGAACCCCCTGA
Protein sequenceShow/hide protein sequence
MVMDGANRFLPGNPTQAEETYSMVTANHFWYQICEEIRGKILNLRLSIYIHQKSSLNRRDSYLDGGSSKISLMKIHLTLYYLRRFYPVETLFNGTLSLVGRNQERTP