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CmoCh11G012260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L23, chloroplastic
Genome locationCmo_Chr11:7431661..7435822
RNA-Seq ExpressionCmoCh11G012260
SyntenyCmoCh11G012260
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ANW48621.1 ribosomal protein L23 [Crescentia cujete]2.6e-2660.68Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTE+KHWVELFFGVKVI  +                                    L +K  KSKYLIA
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA

Query:  WRYIYTKLLPRAHAMEP
        WRYIYTKLLPRAHAMEP
Subjt:  WRYIYTKLLPRAHAMEP

QBE86522.1 ribosomal protein L23 [Microtea debilis]4.5e-2660.17Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLI
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI  +                                    L +++  KSKYLI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLI

Query:  AWRYIYTKLLPRAHAMEP
        AWRYIYTKLLPRAHAMEP
Subjt:  AWRYIYTKLLPRAHAMEP

RQO99415.1 hypothetical protein POPTR_013G138612 [Populus trichocarpa]1.2e-2663.25Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA
        MDGIKYAV TDKS RLL KNQYT NVESGSTRTEIKHWVELFFGVKVI  +                                    LERKELKSKYLIA
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA

Query:  WRYIYTKLLPRAHAMEP
        WRYIYTKLLPRAHAMEP
Subjt:  WRYIYTKLLPRAHAMEP

YP_009486950.1 ribosomal protein L23 [Tylosema fassoglense]5.0e-2551.7Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVK------------------------------------------------------
        MDGIKY V TDKS RLL KNQYT NVESGSTRTEIKHWVELFFGVK                                                      
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVK------------------------------------------------------

Query:  -----------VILFHLLERKELKSKYLIAWRYIYTKLLPRAHAMEP
                   VILFHLLERKEL+SKYLIAWRYIYTKLLPRAHAMEP
Subjt:  -----------VILFHLLERKELKSKYLIAWRYIYTKLLPRAHAMEP

YP_009569894.1 ribosomal protein L23, partial [Microtea debilis]1.7e-2559.83Show/hide
Query:  DGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLIA
        DGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI  +                                    L +++  KSKYLIA
Subjt:  DGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLIA

Query:  WRYIYTKLLPRAHAMEP
        WRYIYTKLLPRAHAMEP
Subjt:  WRYIYTKLLPRAHAMEP

TrEMBL top hitse value%identityAlignment
A0A1B1W700 50S ribosomal protein L23, chloroplastic1.3e-2660.68Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTE+KHWVELFFGVKVI  +                                    L +K  KSKYLIA
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA

Query:  WRYIYTKLLPRAHAMEP
        WRYIYTKLLPRAHAMEP
Subjt:  WRYIYTKLLPRAHAMEP

A0A2S0SV05 50S ribosomal protein L23, chloroplastic2.4e-2551.7Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVK------------------------------------------------------
        MDGIKY V TDKS RLL KNQYT NVESGSTRTEIKHWVELFFGVK                                                      
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVK------------------------------------------------------

Query:  -----------VILFHLLERKELKSKYLIAWRYIYTKLLPRAHAMEP
                   VILFHLLERKEL+SKYLIAWRYIYTKLLPRAHAMEP
Subjt:  -----------VILFHLLERKELKSKYLIAWRYIYTKLLPRAHAMEP

A0A3N7FZE5 50S ribosomal protein L23, chloroplastic5.7e-2763.25Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA
        MDGIKYAV TDKS RLL KNQYT NVESGSTRTEIKHWVELFFGVKVI  +                                    LERKELKSKYLIA
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-----------------------------------LERKELKSKYLIA

Query:  WRYIYTKLLPRAHAMEP
        WRYIYTKLLPRAHAMEP
Subjt:  WRYIYTKLLPRAHAMEP

A0A411JSV4 Ribosomal protein L23 (Fragment)8.2e-2659.83Show/hide
Query:  DGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLIA
        DGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI  +                                    L +++  KSKYLIA
Subjt:  DGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLIA

Query:  WRYIYTKLLPRAHAMEP
        WRYIYTKLLPRAHAMEP
Subjt:  WRYIYTKLLPRAHAMEP

A0A411L2K5 50S ribosomal protein L23, chloroplastic2.2e-2660.17Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLI
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI  +                                    L +++  KSKYLI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH------------------------------------LLERKELKSKYLI

Query:  AWRYIYTKLLPRAHAMEP
        AWRYIYTKLLPRAHAMEP
Subjt:  AWRYIYTKLLPRAHAMEP

SwissProt top hitse value%identityAlignment
A0A378 50S ribosomal protein L23, chloroplastic6.5e-2097.92Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
        MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI

P61845 50S ribosomal protein L23, chloroplastic6.5e-2097.92Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
        MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI

P61846 50S ribosomal protein L23, chloroplastic6.5e-2097.92Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
        MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI

Q09MB3 50S ribosomal protein L23, chloroplastic1.1e-1968.42Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILF--HLLERKELKSKYLIAWRYIYTKLL
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI    H L RK  +   ++A    Y +++
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILF--HLLERKELKSKYLIAWRYIYTKLL

Q49KT5 50S ribosomal protein L23, chloroplastic1.9e-1997.87Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV
        MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV

Arabidopsis top hitse value%identityAlignment
ATCG00840.1 ribosomal protein L23.14.6e-2197.92Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
        MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI

ATCG01300.1 ribosomal protein L234.6e-2197.92Show/hide
Query:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
        MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGA
CTCCGTTTTTTCCTCTTTTCGGATGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTAC
AAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAAC
TTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGG
AATGAGTCAATCATCCACTTTGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCA
AATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC
TTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACA
CGCAATGGAGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGA
CTCCGTTTTTTCCTCTTTTCGGATGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTAC
AAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAAC
TTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGG
AATGAGTCAATCATCCACTTTGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCA
AATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC
TTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACA
CGCAATGGAGCCGTAG
Protein sequenceShow/hide protein sequence
MAYMFGIDSILRELKKHYLVERFYTSALSQGISLDKDSVFSSFRMRCSRNVCDRVNSSTNEWIGSNWKMERFVQVIPFVTTLWKIVRSRSDVDYSRIEVELLYKKKISMN
FYEMVSRDLANCLDRGISLRNRNPCYQRISCDYFSYGMSQSSTLIQERNNQPIDIGRTKRFHFNWNWLCMDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVEL
FFGVKVILFHLLERKELKSKYLIAWRYIYTKLLPRAHAMEP