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CmoCh11G012310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCytochrome b6
Genome locationCmo_Chr11:7506139..7508944
RNA-Seq ExpressionCmoCh11G012310
SyntenyCmoCh11G012310
Gene Ontology termsGO:0019684 - photosynthesis, light reaction (biological process)
GO:0022904 - respiratory electron transport chain (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0034357 - photosynthetic membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005488 - binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
InterPro domainsIPR005797 - Cytochrome b/b6, N-terminal
IPR016174 - Di-haem cytochrome, transmembrane
IPR023530 - Cytochrome b6, PetB
IPR036150 - Cytochrome b/b6, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP36741.1 Cytochrome b6 [Cajanus cajan]1.3e-2553.66Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQG------------------------ISGTIACNVD
        AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMI K                          I GTIACNV 
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQG------------------------ISGTIACNVD

Query:  LAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF+EN+
Subjt:  LAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

RWR97899.1 photosystem II CP47 reaction center-like protein [Cinnamomum micranthum f. kanehirae]4.9e-2862.41Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQ-GISGTIACNVDLAVIGPSMIGEPADPCATPLEIL
        AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQ  I GTIACNV LAV+ PSMIGEPADP ATPLEIL
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQ-GISGTIACNVDLAVIGPSMIGEPADPCATPLEIL

Query:  PEW------------------SSLMVSVPATFLTVPFWENI
        PEW                    LMV VP   LTVPF EN+
Subjt:  PEW------------------SSLMVSVPATFLTVPFWENI

RZC59212.1 hypothetical protein C5167_006516 [Papaver somniferum]3.1e-3063.19Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS----GTIACNVDLAVIGPSMIGEPADPCATPL
        AVKIVTGVP+A+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQGIS    GTIACNV LAV+ PSMIGEPADP ATPL
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS----GTIACNVDLAVIGPSMIGEPADPCATPL

Query:  EILPEW------------------SSLMVSVPATFLTVPFWENI
        EILPEW                    LMVSVPA  LTVPF EN+
Subjt:  EILPEW------------------SSLMVSVPATFLTVPFWENI

XP_027339151.1 cytochrome b-like [Abrus precatorius]1.0e-2550.56Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------
        AVKIVTGVPEA+ V    L+ELLRGS+S GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQGIS                                
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------

Query:  ------GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
              GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVP   LTVPF EN+
Subjt:  ------GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

XP_042528126.1 LOW QUALITY PROTEIN: photosystem II CP47 reaction center protein-like [Dipodomys spectabilis]8.6e-2547.37Show/hide
Query:  AVKIVTGVPEALQ-VHRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------
        AVKIVTGVP+A+  +   L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQGIS                                
Subjt:  AVKIVTGVPEALQ-VHRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------

Query:  ------------------GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
                          GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  ------------------GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

TrEMBL top hitse value%identityAlignment
A0A151R2C1 Cytochrome b6.4e-2653.66Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQG------------------------ISGTIACNVD
        AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMI K                          I GTIACNV 
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQG------------------------ISGTIACNVD

Query:  LAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF+EN+
Subjt:  LAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

A0A443Q4G6 Cytochrome b2.4e-2862.41Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQ-GISGTIACNVDLAVIGPSMIGEPADPCATPLEIL
        AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQ  I GTIACNV LAV+ PSMIGEPADP ATPLEIL
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQ-GISGTIACNVDLAVIGPSMIGEPADPCATPLEIL

Query:  PEW------------------SSLMVSVPATFLTVPFWENI
        PEW                    LMV VP   LTVPF EN+
Subjt:  PEW------------------SSLMVSVPATFLTVPFWENI

A0A4Y7JGN8 Cytochrome b1.5e-3063.19Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS----GTIACNVDLAVIGPSMIGEPADPCATPL
        AVKIVTGVP+A+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQGIS    GTIACNV LAV+ PSMIGEPADP ATPL
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS----GTIACNVDLAVIGPSMIGEPADPCATPL

Query:  EILPEW------------------SSLMVSVPATFLTVPFWENI
        EILPEW                    LMVSVPA  LTVPF EN+
Subjt:  EILPEW------------------SSLMVSVPATFLTVPFWENI

A0A6P5Y5R8 Cytochrome b1.6e-2448.15Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------
        AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHF MIRKQGIS                                
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------

Query:  -----------------GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
                         GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  -----------------GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

T1L7H0 Cytochrome b4.2e-2549.71Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------
        AVKIVTGVP+A+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFPMIRKQ ++                                
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGIS--------------------------------

Query:  ---GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
           GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVP   LTVPF EN+
Subjt:  ---GTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

SwissProt top hitse value%identityAlignment
A0ZZ66 Cytochrome b6-f complex subunit 45.4e-1455.81Show/hide
Query:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

P56774 Cytochrome b6-f complex subunit 45.4e-1455.81Show/hide
Query:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

Q49KW7 Cytochrome b6-f complex subunit 45.4e-1455.81Show/hide
Query:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

Q4VZK4 Cytochrome b6-f complex subunit 45.4e-1455.81Show/hide
Query:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

Q7FNS2 Cytochrome b6-f complex subunit 45.4e-1455.81Show/hide
Query:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI

Arabidopsis top hitse value%identityAlignment
ATCG00720.1 photosynthetic electron transfer B1.6e-1366.2Show/hide
Query:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGISGTI
        AVKIVTGVP+A+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHF MIRKQGISG +
Subjt:  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFPMIRKQGISGTI

ATCG00730.1 photosynthetic electron transfer D3.9e-1555.81Show/hide
Query:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI
        +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW                    LMVSVPA  LTVPF EN+
Subjt:  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------SSLMVSVPATFLTVPFWENI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGCAAGATGGTCTTAATGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCGGTTATTGGGCAGGCAGTCAAAAT
TGTAACAGGTGTACCGGAAGCTCTTCAAGTACATAGGGTCTTGCTAGAGTTATTACGTGGAAGTGCTAGTGGGGGACAATCTACCTTGACTCGTTTTTCTAGTTTACACA
TTTTGACCTCTTCTTACTGCCTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTACTATTGCATGTAACGTGGATTTAGCAGTTATAGGACCATCA
ATGATTGGTGAACCCGCAGATCCATGTGCAACTCCTTTGGAAATATTGCCGGAATGGTCTTCTTTAATGGTTTCCGTACCGGCGACATTCTTAACTGTACCCTTTTGGGA
GAATATTGAGTTCTGGGAGGAATTACAGCTCATCATTTTTGTTCACCAGAGAAAGAAGGCTCTGACATTCTGGCTTCGCTTCTTCTTGAGCCCAGACGCCAACGCAGGCG
AGGTAAAGGAAGAAGACGAGTTGGAGAGGTTAAAGCAATGGAATAGAATATGCTTTACCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGCAAGATGGTCTTAATGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCGGTTATTGGGCAGGCAGTCAAAAT
TGTAACAGGTGTACCGGAAGCTCTTCAAGTACATAGGGTCTTGCTAGAGTTATTACGTGGAAGTGCTAGTGGGGGACAATCTACCTTGACTCGTTTTTCTAGTTTACACA
TTTTGACCTCTTCTTACTGCCTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTACTATTGCATGTAACGTGGATTTAGCAGTTATAGGACCATCA
ATGATTGGTGAACCCGCAGATCCATGTGCAACTCCTTTGGAAATATTGCCGGAATGGTCTTCTTTAATGGTTTCCGTACCGGCGACATTCTTAACTGTACCCTTTTGGGA
GAATATTGAGTTCTGGGAGGAATTACAGCTCATCATTTTTGTTCACCAGAGAAAGAAGGCTCTGACATTCTGGCTTCGCTTCTTCTTGAGCCCAGACGCCAACGCAGGCG
AGGTAAAGGAAGAAGACGAGTTGGAGAGGTTAAAGCAATGGAATAGAATATGCTTTACCCAGTGA
Protein sequenceShow/hide protein sequence
MVGKMVLMCGSGCIDRILWCNWLFLTSGPVIGQAVKIVTGVPEALQVHRVLLELLRGSASGGQSTLTRFSSLHILTSSYCLMLMHFPMIRKQGISGTIACNVDLAVIGPS
MIGEPADPCATPLEILPEWSSLMVSVPATFLTVPFWENIEFWEELQLIIFVHQRKKALTFWLRFFLSPDANAGEVKEEDELERLKQWNRICFTQ