; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G012330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr11:7554419..7555234
RNA-Seq ExpressionCmoCh11G012330
SyntenyCmoCh11G012330
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]1.2e-9566.79Show/hide
Query:  GDNSDHHEDNPHA-----------VGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLC
        GD SDH ED+              VG GL RGR  GR  HN Q+    + ++DRN+G+I LKL  FYGKTDPE Y+QW K VE VF+CHNFS+EKKV LC
Subjt:  GDNSDHHEDNPHA-----------VGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLC

Query:  ISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIA
        ++QFK YA  WWDKLMS RRRNLEAPIDSW EFKE +R+RFVP++F RD AQKLQ L+QG KSVEDYYKEMDTLM+RL+L+EDME LMARFLNGLN EIA
Subjt:  ISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIA

Query:  DKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        DK DLQPY NIEE+LH+AIKIE+Q+QRRSQ YS+K F +S+STWK DSK+ D K RN+E  EKP+ KFEKGESS+  KEK
Subjt:  DKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]1.4e-13994.05Show/hide
Query:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW
        GDNSDHHEDNPHAVGHGLMRGRDHGRR HNLQQRVPYDDRIDRNVGSI LKLP FYGKTDPEEYLQWEKTVESVFNCHNFSD+KKVLLCI+QFKQYAQIW
Subjt:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW

Query:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI
        WDKLMSSRRRNLEAPIDSW EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRL        LMARFLNGLNTEIADKTDLQPYSNI
Subjt:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI

Query:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        EELLHIAIKIERQIQRRSQ YSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKP+AKFEKGESSRTGKEK
Subjt:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]1.1e-14496.65Show/hide
Query:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW
        GDNSDHHEDNPHAVGHGLMRGRDHGRR HNLQQRVPYDDRIDRNVGSI LKLP FYGKTDPEEYLQWEKTVESVFNCHNFSD+KKVLLCI+QFKQYAQIW
Subjt:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW

Query:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI
        WDKLMSSRRRNLEAPIDSW EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADKTDLQPYSNI
Subjt:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI

Query:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        EELLHIAIKIERQIQRRSQ YSSKTFPNSTSTWKKDSKNIDYKHRN EINEKPQAKFEKGESSRTGKEK
Subjt:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

XP_023541047.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp. pepo]5.3e-13992.94Show/hide
Query:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW
        GDN DHHEDNPHAVGHGLMRGRDHGRR HNLQQRVPYDDRIDRNVGSI LKLP FYGKTDP+EY +WEKTV+SVFNCHNFSDEKKVLLCI+QFKQYAQIW
Subjt:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW

Query:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI
        WDKLMSSRRRNLEAPIDSWVEFKESMRK FVPQYFQRDMAQKLQALKQGRKS EDYYKEMDTLMDRLELDE+MEALMARFLNGLNT+IADKTDLQPYSNI
Subjt:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI

Query:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        EELLHIAIKI+RQIQRRSQ YSSKTF NSTS WKKD+KNIDYKHRNQEINEKPQAKFE+GESSRTGKEK
Subjt:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

XP_023553652.1 uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]1.6e-14395.54Show/hide
Query:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW
        GDNSDHHEDNPHAVGHGLMRGRDHGRR HNLQQRVPYDDRIDRNVGSI LKLP FYGKTDPEEYL+WEKT+ESVF CHNFSD+KKVLLCI+QFKQYAQIW
Subjt:  GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW

Query:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI
        WDKLMSSRRRNLEAPIDSW EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADKTDLQPYSNI
Subjt:  WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNI

Query:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        EELLHIAIKIERQIQRRSQ YSSKTFPNSTSTWKKDSKNIDYKHRN EINEKPQAKFEKGESSRTGKEK
Subjt:  EELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

TrEMBL top hitse value%identityAlignment
A0A6J1DFN2 uncharacterized protein LOC1110200571.5e-9468.94Show/hide
Query:  HEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDD-RIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLM
        H       GH L RGR  G + HN Q+R P ++ ++DRN+GSI LK+  F+GKTDPEEYLQWE  VESVF CHNFS+EKK+ L +++FKQYAQ WWDKLM
Subjt:  HEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDD-RIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLM

Query:  SSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLH
        S RRRNLEAPI SW EF ES+++RFVP++F+RDMAQKLQAL+QG KSVEDYYKE+DTLMDR++LDEDM+ LMARFLN LN EIADK DLQPY +IEE+LH
Subjt:  SSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLH

Query:  IAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        +AIKIERQIQR+SQ YSSK F NS++TWKKDSKN D    N E NEKP++K EKGESS  GKEK
Subjt:  IAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241156.0e-9666.79Show/hide
Query:  GDNSDHHEDNPHA-----------VGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLC
        GD SDH ED+              VG GL RGR  GR  HN Q+    + ++DRN+G+I LKL  FYGKTDPE Y+QW K VE VF+CHNFS+EKKV LC
Subjt:  GDNSDHHEDNPHA-----------VGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLC

Query:  ISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIA
        ++QFK YA  WWDKLMS RRRNLEAPIDSW EFKE +R+RFVP++F RD AQKLQ L+QG KSVEDYYKEMDTLM+RL+L+EDME LMARFLNGLN EIA
Subjt:  ISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIA

Query:  DKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        DK DLQPY NIEE+LH+AIKIE+Q+QRRSQ YS+K F +S+STWK DSK+ D K RN+E  EKP+ KFEKGESS+  KEK
Subjt:  DKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

A0A6J1EQJ1 uncharacterized protein LOC1114365301.5e-8398.81Show/hide
Query:  DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE
        DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNIE
Subjt:  DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE

Query:  ELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        ELLHIAIKIERQIQRRSQ YSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
Subjt:  ELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

A0A6J1EVV9 uncharacterized protein LOC1114364634.5e-8398.21Show/hide
Query:  DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE
        DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNIE
Subjt:  DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE

Query:  ELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        ELLHIAIKIERQIQRRSQ YSSKTFPNSTSTWKK+SKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
Subjt:  ELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

A0A6J1G2Q3 uncharacterized protein LOC1114502862.2e-8297.62Show/hide
Query:  DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE
        DKLMSSRRRNLEAPIDSWVEFKESMRK FVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNIE
Subjt:  DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE

Query:  ELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK
        ELLHIAIKIERQIQRRSQ YSSKTFPNSTSTWKKDSK+IDYKHRNQEINEKPQAKFEKGESSRTGKEK
Subjt:  ELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTGTCATAATTTACAACAACGAGT
TCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAATTTAAAACTTCCCATGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGG
AGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTCTTATGCATTTCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGG
AGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGC
GTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTA
ATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCT
CAACTGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGC
TAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTGTCATAATTTACAACAACGAGT
TCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAATTTAAAACTTCCCATGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGG
AGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTCTTATGCATTTCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGG
AGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGC
GTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTA
ATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCT
CAACTGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGC
TAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAATAG
Protein sequenceShow/hide protein sequence
MRGDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLMSSR
RRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRS
QLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEK