; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G012540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr11:7940554..7942625
RNA-Seq ExpressionCmoCh11G012540
SyntenyCmoCh11G012540
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR021109 - Aspartic peptidase domain superfamily
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022972954.1 uncharacterized protein LOC111471473 [Cucurbita maxima]3.3e-13778.31Show/hide
Query:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-------------------
        + A+  +  P   V KG  VPFKIGDW GELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLVITD NP VIPA+IKQP                   
Subjt:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-------------------

Query:  -----------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVL
                    T EET+P EI EVLN YADIMPESLPQTLPPR+GIDHEIEL  GVKPPAKNAY+MAPP+LAELRKQLDELLKAGFIRP KAPY A VL
Subjt:  -----------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVL

Query:  FQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVF
        FQKKKDG L LCIDYRALNKVTVRNKYPLPIISDLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCTLMNQVF
Subjt:  FQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVF

Query:  YEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLV
        YEYLDQFVIVYL++IVVY+TTLEEHKVHLKL+
Subjt:  YEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLV

XP_022975516.1 uncharacterized protein LOC111474945, partial [Cucurbita maxima]9.3e-14888.03Show/hide
Query:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-ATTEETIPEEIKEVLNSY
        + A+  +  P   V KG  VPFKIGDW GELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNP VIPA+IKQP  TTEET+P EI EVLN Y
Subjt:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-ATTEETIPEEIKEVLNSY

Query:  ADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRALNKVTVRNKYPL
        ADIMPESLPQTLPPRRGIDHEIEL  GVKPPAKNAYRMAPP+LAELRKQLDELLKAGFIRPAKAPY APVLFQKKKDG L LCIDYRALNKVTVRNKYPL
Subjt:  ADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRALNKVTVRNKYPL

Query:  PIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVYNTTLEEHKVHL
        PIISDLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCTLMNQVFYEYLDQFVIVYL++IVVY+TTLEEHKVHL
Subjt:  PIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVYNTTLEEHKVHL

Query:  KLVFDKLRK
        KLVFDKLR+
Subjt:  KLVFDKLRK

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]2.8e-15284.23Show/hide
Query:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP---------------------
        MKAVNSE LPIVGVSKGVPFKIGDW GELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNP VIPA+IKQP                     
Subjt:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP---------------------

Query:  ---------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ
                 ATTEET+PEEIKEVL++Y DIMPESLPQTLPPRRGIDHEIEL  GVKPPAKNAYRMAPP+LAELRKQLDELLKAGFIRPAKAPY APVLFQ
Subjt:  ---------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ

Query:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE
        KKKDG L LCIDYRALNKVTVRNKYPLPIISDLFDQLH AKYFTKLDLRS YYQVRI EGDEPKTTCVTRYGAFEFLVMPFGLTNA ATF TLMNQVFYE
Subjt:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE

Query:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK
        YLDQFVIVYL++IVVY+TTLEEHKVHLKLVFDKLR+
Subjt:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK

XP_023526180.1 uncharacterized protein LOC111789739 [Cucurbita pepo subsp. pepo]6.0e-15585.42Show/hide
Query:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP---------------------
        MKAVNSE LPIVGVSKGVPFKIGDW GELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPA+IKQP                     
Subjt:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP---------------------

Query:  ---------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ
                 ATTEET+PEEIKEVL+SY DIMPESLPQTLPPRRGIDHEIEL  GVKPPAKNAYRMAPP+LAELRKQLDELLKAGFIRPAKAPY APVLFQ
Subjt:  ---------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ

Query:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE
        KKKDG L LCIDYRALNKVTVRNKYPLPIISDLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCTLMNQVFYE
Subjt:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE

Query:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK
        YLDQFVIVYL++IVVY+TTLEEHKVHLKLVFDKLR+
Subjt:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]5.1e-15484.82Show/hide
Query:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP---------------------
        MKAVNSE LPIVGVSKGVPFKIGDW GELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNP VIPA+IKQP                     
Subjt:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP---------------------

Query:  ---------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ
                 ATTEET+PEEIK+VL+SY DIMPESLPQTLPPRRGIDHEIEL  GVKPPAKNAYRMAPP+LAELRKQLDELLKAGFIRPAKAPY APVLFQ
Subjt:  ---------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ

Query:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE
        KKKDG L LCIDYRALNKVTVRNKYPLPIISDLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCTLMNQVFYE
Subjt:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE

Query:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK
        YLDQFVIVYL++IVVY+TTLEEHKVHLKLVFDKLR+
Subjt:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK

TrEMBL top hitse value%identityAlignment
A0A6J1D906 Reverse transcriptase2.9e-13171.43Show/hide
Query:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQPA--------------------
        MK VN E LPIVGVSK V  K+G W G +D VVVRMDDFDVVLGMEFL+EHKVIPMPLAKC+++T  +P V+  +IKQP                     
Subjt:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQPA--------------------

Query:  ----------TTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ
                       +P EI+ V+  Y DIMP+SLP+TLPPRRGIDHEIEL  G KPPAKNAYRMAPP+LAELRKQLDELL AGFIRPAKAP+ APVLFQ
Subjt:  ----------TTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQ

Query:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE
        KKKDG L LCIDYRALNKVTVRNKYPLPII+DLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVM FGLTNA ATFCT+MNQVF+E
Subjt:  KKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYE

Query:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK
        YLDQFV+VYL++IVVY+ TL+EH++HL+LVFDKLR+
Subjt:  YLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRK

A0A6J1DK29 uncharacterized protein LOC1110218295.3e-13373.33Show/hide
Query:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQPA--------------------
        MKAVNSE LPIVGVSK V  K+G W G  D VVVRMDDFDVVLGMEFL+EHKVIPMPLAKC+++T  +P V+ A+IKQP                     
Subjt:  MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQPA--------------------

Query:  ----TTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGP
                 +P EI+ V+  Y DIMP+SLP+TLPPRRGIDHEIEL  G KPPAKNAYRMAPPKLAELRKQLDEL   GFIRPAKAP+ A VLFQKKKDG 
Subjt:  ----TTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGP

Query:  LHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFV
        L LCIDYRALNKVTVRNKYPLPII+DLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCT+MNQVF+EYLDQFV
Subjt:  LHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFV

Query:  IVYLNNIVVYNTTLEEHKVHLKLVFDKLRK
        +VYL++IVVY+ TL+EH++HL+LVFDKLR+
Subjt:  IVYLNNIVVYNTTLEEHKVHLKLVFDKLRK

A0A6J1ID35 uncharacterized protein LOC1114714731.6e-13778.31Show/hide
Query:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-------------------
        + A+  +  P   V KG  VPFKIGDW GELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLVITD NP VIPA+IKQP                   
Subjt:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-------------------

Query:  -----------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVL
                    T EET+P EI EVLN YADIMPESLPQTLPPR+GIDHEIEL  GVKPPAKNAY+MAPP+LAELRKQLDELLKAGFIRP KAPY A VL
Subjt:  -----------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVL

Query:  FQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVF
        FQKKKDG L LCIDYRALNKVTVRNKYPLPIISDLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCTLMNQVF
Subjt:  FQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVF

Query:  YEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLV
        YEYLDQFVIVYL++IVVY+TTLEEHKVHLKL+
Subjt:  YEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLV

A0A6J1IDF7 uncharacterized protein LOC1114742153.4e-12774.7Show/hide
Query:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-------------------
        + A+  +  P   V KG  VPFKIGDW GELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLV+TDRNP VIPA+IKQP                   
Subjt:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-------------------

Query:  -----------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVL
                   ATTEET+P EI EVLNSYADIM ESLPQTLPPRR               AKNAYRMA P+LAELRKQLDELLKAGFIRP KAPY APVL
Subjt:  -----------ATTEETIPEEIKEVLNSYADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVL

Query:  FQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVF
        FQKKKDG LHLCIDYRALNKVTVRNK+PLPIISDLFDQLH AKYFTKLDL S YYQVRIAEGDEP+TTCVTRYGAFEFLVMPF LTNA ATFCTLMNQVF
Subjt:  FQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVF

Query:  YEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLV
        YEYLDQFVIVYL++IVVY+TTLEEHKVHLKL+
Subjt:  YEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLV

A0A6J1IEF9 uncharacterized protein LOC1114749454.5e-14888.03Show/hide
Query:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-ATTEETIPEEIKEVLNSY
        + A+  +  P   V KG  VPFKIGDW GELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNP VIPA+IKQP  TTEET+P EI EVLN Y
Subjt:  MKAVNSETLPIVGVSKG--VPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQP-ATTEETIPEEIKEVLNSY

Query:  ADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRALNKVTVRNKYPL
        ADIMPESLPQTLPPRRGIDHEIEL  GVKPPAKNAYRMAPP+LAELRKQLDELLKAGFIRPAKAPY APVLFQKKKDG L LCIDYRALNKVTVRNKYPL
Subjt:  ADIMPESLPQTLPPRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRALNKVTVRNKYPL

Query:  PIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVYNTTLEEHKVHL
        PIISDLFDQLH AKYFTKLDLRS YYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA ATFCTLMNQVFYEYLDQFVIVYL++IVVY+TTLEEHKVHL
Subjt:  PIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVYNTTLEEHKVHL

Query:  KLVFDKLRK
        KLVFDKLR+
Subjt:  KLVFDKLRK

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein5.0e-3535.59Show/hide
Query:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL
        E+ ++   + DI  E+  + LP P +G++ E+EL     + P +N Y + P K+  +  ++++ LK+G IR +KA    PV+F  KK+G L + +DY+ L
Subjt:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL

Query:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY
        NK    N YPLP+I  L  ++  +  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ A A F   +N +  E  +  V+ Y+++I+++
Subjt:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY

Query:  NTTLEEHKVHLKLVFDKLRKTN
        + +  EH  H+K V  KL+  N
Subjt:  NTTLEEHKVHLKLVFDKLRKTN

P0CT42 Transposon Tf2-7 polyprotein2.2e-3536.04Show/hide
Query:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL
        E+ ++   + DI  E+  + LP P +G++ E+EL     + P +N Y + P K+  +  ++++ LK+G IR +KA    PV+F  KK+G L + +DY+ L
Subjt:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL

Query:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY
        NK    N YPLP+I  L  ++  +  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ A A F   +N +  E  +  V+ Y++NI+++
Subjt:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY

Query:  NTTLEEHKVHLKLVFDKLRKTN
        + +  EH  H+K V  KL+  N
Subjt:  NTTLEEHKVHLKLVFDKLRKTN

P0CT43 Transposon Tf2-8 polyprotein2.2e-3536.04Show/hide
Query:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL
        E+ ++   + DI  E+  + LP P +G++ E+EL     + P +N Y + P K+  +  ++++ LK+G IR +KA    PV+F  KK+G L + +DY+ L
Subjt:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL

Query:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY
        NK    N YPLP+I  L  ++  +  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ A A F   +N +  E  +  V+ Y++NI+++
Subjt:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY

Query:  NTTLEEHKVHLKLVFDKLRKTN
        + +  EH  H+K V  KL+  N
Subjt:  NTTLEEHKVHLKLVFDKLRKTN

P31843 RNA-directed DNA polymerase homolog3.7e-4670.08Show/hide
Query:  LHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFV
        L +CIDYRAL KVT++NKYP+P + DLFD+L +A +FTKLDLRS Y+QVRIA+GDEPKTTCVTRYG+FEF VMPFGLTNALATFC LMN V YEYLD FV
Subjt:  LHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFV

Query:  IVYLNNIVV---YNTTLEEHKVHLKLV
        +VYL+++VV   Y+ +L EH  HL++V
Subjt:  IVYLNNIVV---YNTTLEEHKVHLKLV

Q9UR07 Transposon Tf2-11 polyprotein2.2e-3536.04Show/hide
Query:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL
        E+ ++   + DI  E+  + LP P +G++ E+EL     + P +N Y + P K+  +  ++++ LK+G IR +KA    PV+F  KK+G L + +DY+ L
Subjt:  EIKEVLNSYADIMPESLPQTLP-PRRGIDHEIELFL-GVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRAL

Query:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY
        NK    N YPLP+I  L  ++  +  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ A A F   +N +  E  +  V+ Y++NI+++
Subjt:  NKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRSEYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVY

Query:  NTTLEEHKVHLKLVFDKLRKTN
        + +  EH  H+K V  KL+  N
Subjt:  NTTLEEHKVHLKLVFDKLRKTN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTGTCAACTCCGAGACCTTGCCTATTGTGGGAGTTTCCAAAGGAGTCCCCTTCAAAATAGGGGATTGGATAGGAGAGCTAGACCTTGTCGTGGTTCGCATGGA
CGACTTCGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTCATCCCAATGCCACTGGCGAAATGCTTGGTGATCACCGATCGCAACCCCATAGTAATACCTG
CAAACATCAAGCAACCAGCGACCACCGAAGAAACTATCCCAGAGGAAATTAAGGAAGTACTAAATAGCTATGCCGACATAATGCCAGAGAGCCTACCCCAAACACTACCA
CCTCGTCGAGGCATTGACCATGAAATCGAACTCTTCCTCGGGGTTAAACCGCCAGCGAAGAATGCATACCGGATGGCTCCGCCCAAGCTAGCCGAATTGAGAAAACAACT
GGATGAGTTGTTGAAGGCGGGGTTCATTCGCCCGGCAAAGGCACCTTACGTAGCCCCCGTACTGTTTCAGAAGAAGAAGGATGGGCCGTTGCATCTGTGCATAGACTATA
GAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCGCTGCCGATAATATCCGACTTGTTCGACCAACTTCACAGGGCCAAGTACTTCACGAAGTTGGACTTACGATCA
GAGTATTACCAAGTACGTATTGCCGAAGGGGACGAACCCAAGACGACGTGTGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAATGCCCT
AGCTACTTTCTGCACGTTGATGAACCAAGTTTTCTATGAATACTTGGATCAGTTCGTCATAGTATACCTCAACAACATCGTTGTTTACAACACAACCCTAGAGGAACACA
AAGTGCACTTGAAGCTGGTGTTTGACAAGCTACGCAAAACCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTGTCAACTCCGAGACCTTGCCTATTGTGGGAGTTTCCAAAGGAGTCCCCTTCAAAATAGGGGATTGGATAGGAGAGCTAGACCTTGTCGTGGTTCGCATGGA
CGACTTCGACGTGGTACTTGGGATGGAGTTCCTCCTAGAACACAAAGTCATCCCAATGCCACTGGCGAAATGCTTGGTGATCACCGATCGCAACCCCATAGTAATACCTG
CAAACATCAAGCAACCAGCGACCACCGAAGAAACTATCCCAGAGGAAATTAAGGAAGTACTAAATAGCTATGCCGACATAATGCCAGAGAGCCTACCCCAAACACTACCA
CCTCGTCGAGGCATTGACCATGAAATCGAACTCTTCCTCGGGGTTAAACCGCCAGCGAAGAATGCATACCGGATGGCTCCGCCCAAGCTAGCCGAATTGAGAAAACAACT
GGATGAGTTGTTGAAGGCGGGGTTCATTCGCCCGGCAAAGGCACCTTACGTAGCCCCCGTACTGTTTCAGAAGAAGAAGGATGGGCCGTTGCATCTGTGCATAGACTATA
GAGCCTTAAACAAGGTGACGGTACGCAACAAATATCCGCTGCCGATAATATCCGACTTGTTCGACCAACTTCACAGGGCCAAGTACTTCACGAAGTTGGACTTACGATCA
GAGTATTACCAAGTACGTATTGCCGAAGGGGACGAACCCAAGACGACGTGTGTAACAAGATATGGGGCCTTCGAATTCCTAGTAATGCCCTTTGGCTTGACAAATGCCCT
AGCTACTTTCTGCACGTTGATGAACCAAGTTTTCTATGAATACTTGGATCAGTTCGTCATAGTATACCTCAACAACATCGTTGTTTACAACACAACCCTAGAGGAACACA
AAGTGCACTTGAAGCTGGTGTTTGACAAGCTACGCAAAACCAACTAATGGAAAGTTCCTACTTCCGTATCCGAGGTGCGGTCCTTCTTAGGATTAGCCAACTACTATAGG
CGGTTCGTCGAAGAGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCGAATGATTGTCAAATGGCCTTTGAAAATCTGAA
AACAACCATGACGAGGGGTCCTATCCTCAAGTTGGTAGATGTTACAAAGCCATTTGAAATAGAAACAGATGCTTCCGACTTTGCTCTAGGTGGGGTCCTTATTCAGGAAG
GCCGCCCCATCGCTTACGAAAGTCGAAAGCTCAACAATGCCGAACGGAGATACACTGTCTCCAAGAAAGAAATGCTGGCTGTAGTCCACTGCCTTCGAGTCTGGAGACAG
TATCTCTTGGGATCACAGTTCGTAGTGAAGATGGGTAACAGCGCCATTTGCCACTTCTTTGATCAACCAAAATTAACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGC
CGAATTTGACTTCAAGTTCGAACACAAAGCAGGAAAGAGTAATCAAGCAGCCGACGCACTGAGTCGGAAGGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATTCATT
CAAGTAAGATCGATGGATCGATGCGCGACATCATCAAGGAACATTTACATAAAGACCCATCGGCCAAAGCCGTTGTCGAACTAGCTAAAGCTGGAAAAACACGACAGTTT
TGGGTTGAGGGAGACCTCCTGATGACCAAAGAAAACAGATTGCATGTCCCAAGAACGAGGGAACTGAGAAAGAAGCTCATTCAAGAATGTCATGATACCTTATGGGCCGG
ACACCCGGGGTGGCAAAGAACATACGCCCTAATAAAGAAGGGGTACTTCTGGCCAAACATGCAAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAATAG
Protein sequenceShow/hide protein sequence
MKAVNSETLPIVGVSKGVPFKIGDWIGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPIVIPANIKQPATTEETIPEEIKEVLNSYADIMPESLPQTLP
PRRGIDHEIELFLGVKPPAKNAYRMAPPKLAELRKQLDELLKAGFIRPAKAPYVAPVLFQKKKDGPLHLCIDYRALNKVTVRNKYPLPIISDLFDQLHRAKYFTKLDLRS
EYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNALATFCTLMNQVFYEYLDQFVIVYLNNIVVYNTTLEEHKVHLKLVFDKLRKTN