CuGenDBv2

Gene ID	CmoCh11G012570
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Flap endonuclease 1
Genome location	Cmo_Chr11:8014552..8020104
RNA-Seq Expression	CmoCh11G012570
Synteny	CmoCh11G012570
Gene Ontology terms	GO:0006284 - base-excision repair (biological process) GO:0043137 - DNA replication, removal of RNA primer (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0005730 - nucleolus (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0008409 - 5'-3' exonuclease activity (molecular function) GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domains	IPR006084 - XPG/Rad2 endonuclease IPR006086 - XPG-I domain IPR029060 - PIN-like domain superfamily IPR036279 - 5'-3' exonuclease, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022159613.1 flap endonuclease 1 isoform X1 [Momordica charantia]

2.5e-86

70.61

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSP+FLRHLMDPSSRKIPVMEFEVAK L+ L+ S D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
          WP+QEARQLFKEPLVCTDEEQLDIKWTTPDEEGL++FLVNENGFNSDRVTKAVEKIKAAKNKSSQGR+ESFFKPVTNPSV  KRKVTKCV++SPKPG+
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        Q KYSPQAFY SRTKVIGSLG  +L+ SSKYSGS PLVMA CFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

XP_022931724.1 flap endonuclease 1 isoform X1 [Cucurbita moschata]

6.4e-98

78.78

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Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

XP_022969705.1 flap endonuclease 1 isoform X1 [Cucurbita maxima]

3.3e-94

75.92

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Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEV+K L+ L+ + D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        E WPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLIS LVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHKYSPQAFYPSRTKVIGSLGTPI+DHS KYSGS+PLVMA CFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

XP_023531871.1 flap endonuclease 1 isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-97

78.37

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Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA CFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

XP_038879461.1 flap endonuclease 1 isoform X1 [Benincasa hispida]

6.0e-88

71.02

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Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        + WP+QEARQLFKEPLVCTDEEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRKV KCVL+SPKPG 
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHK+SPQAFY SRTK IGSLG  +LDHSSKYSGS PLVMA CFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BPA7 Flap endonuclease 1

1.3e-83

69.39

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        + WP++EARQLFKEPLVCTDEEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRKV K VL+ PKPG 
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHK+S QAF  SR+KVIGSLG  +LDHSSKYSGS PLVMAACFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

A0A1S3BQ01 Flap endonuclease 1

1.3e-83

69.39

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        + WP++EARQLFKEPLVCTDEEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRKV K VL+ PKPG 
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHK+S QAF  SR+KVIGSLG  +LDHSSKYSGS PLVMAACFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

A0A6J1DZA7 Flap endonuclease 1

1.2e-86

70.61

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Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSP+FLRHLMDPSSRKIPVMEFEVAK L+ L+ S D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
          WP+QEARQLFKEPLVCTDEEQLDIKWTTPDEEGL++FLVNENGFNSDRVTKAVEKIKAAKNKSSQGR+ESFFKPVTNPSV  KRKVTKCV++SPKPG+
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        Q KYSPQAFY SRTKVIGSLG  +L+ SSKYSGS PLVMA CFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

A0A6J1EV18 Flap endonuclease 1

3.1e-98

78.78

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

A0A6J1I0P7 Flap endonuclease 1

1.6e-94

75.92

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEV+K L+ L+ + D+ V                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
        E WPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLIS LVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGI

Query:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT
        QHKYSPQAFYPSRTKVIGSLGTPI+DHS KYSGS+PLVMA CFGT
Subjt:  QHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

SwissProt top hits

e value

%identity

Alignment

B8AW67 Flap endonuclease 1-A

2.8e-48

57.07

Show/hide

Query:  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQ
        D VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK L+ L  + D+ +                                      +    YQ
Subjt:  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQ

Query:  IPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT
        IPE WP+QEAR+LFKEP V  D  +L  KW  PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV + SV  KRK T
Subjt:  IPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT

C5YUK3 Flap endonuclease 1-A

1.4e-47

56.54

Show/hide

Query:  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQ
        D V+AVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEF+VAK L+ L  + D+ +                                      +    YQ
Subjt:  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQ

Query:  IPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT
        IPE WP+QEAR+LFKEP V  D  +L  KWT PDEEGLISFLV +NGFN DRVTKA+EKIK+AKNKSSQGR+ESFFKPV   S   KRK T
Subjt:  IPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT

C6TEX6 Flap endonuclease 1

4.5e-54

59.26

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VY V SEDMDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAK L+ L+ + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT
        + WP+QEAR+LFKEPLV TDE++LDIKW++PDEEGLI+FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKP  NPSV  KRK T
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT

O65251 Flap endonuclease 1

2.9e-53

60.43

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK
        E WP+ EAR+LFKEP V TDEEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRK
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK

Q9SXQ6 Flap endonuclease 1-A

2.8e-48

57.07

Show/hide

Query:  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQ
        D VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK L+ L  + D+ +                                      +    YQ
Subjt:  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQ

Query:  IPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT
        IPE WP+QEAR+LFKEP V  D  +L  KW  PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV + SV  KRK T
Subjt:  IPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVT

Arabidopsis top hits

e value

%identity

Alignment

AT5G26680.1 5'-3' exonuclease family protein

2.1e-54

60.43

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK
        E WP+ EAR+LFKEP V TDEEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRK
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK

AT5G26680.2 5'-3' exonuclease family protein

2.1e-54

60.43

Show/hide

Query:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP
        VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +                                      +  + YQIP
Subjt:  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV--------------------------------------VTGKLYQIP

Query:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK
        E WP+ EAR+LFKEP V TDEEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRK
Subjt:  EGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCT
TCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGC
TGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGAT
GAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCG
GATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTC
CACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGC
TTCGGCACATGAAGCTGAAAACGCTGGTGAAACTGGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAAT
ATATACATATGGAAACTATAATTATGGAGCTCAAGGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGCGTTGT
GTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTGGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAGGCAACACACTGATCAATCATTTTGCC
GACTTTGATTTTTAGTTTTAGTTGTGGTGGAGTATTTATGATTAATGGTCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATT
TTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTATACCTTTTATTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATCAATATT
ATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAATAAAGTAGGAAG
AGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTC
TTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTGTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAAT
GATAATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGA
GAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCA

Protein sequence

Show/hide protein sequence

MHAFFVVGSMNLGGFDFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKLKYLSNSFDKSVVTGKLYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPD
EEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAAC
FGT

CmoCh11G012570 (gene) of Cucurbita moschata (Rifu) v1 genome