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CmoCh11G012640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G012640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmethyl-CpG-binding domain protein 4-like protein
Genome locationCmo_Chr11:8062073..8063360
RNA-Seq ExpressionCmoCh11G012640
SyntenyCmoCh11G012640
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR003265 - HhH-GPD domain
IPR011257 - DNA glycosylase
IPR045138 - Methyl-CpG binding protein MeCP2/MBD4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022375.1 Methyl-CpG-binding domain protein 4-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3986.46Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

XP_022156995.1 methyl-CpG-binding domain protein 4-like protein [Momordica charantia]7.2e-3679.17Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AK+VIPKLFTLCP+PK+ALEVS EQIEDIIRPLGLQRKRS TIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW +
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

XP_022931728.1 methyl-CpG-binding domain protein 4-like protein [Cucurbita moschata]1.8e-3986.46Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

XP_022969557.1 methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima]1.8e-3986.46Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

XP_023529473.1 methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo]4.1e-3985.42Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AK+VIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

TrEMBL top hitse value%identityAlignment
A0A1S3CCU6 methyl-CpG-binding domain protein 4-like protein1.1e-3476.04Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLGL RKRS T+ RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+E
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

A0A5D3CU57 Methyl-CpG-binding domain protein 4-like protein7.3e-3476.6Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW
        +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLGL RKRS T+ RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW

A0A6J1DRX8 methyl-CpG-binding domain protein 4-like protein3.5e-3679.17Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AK+VIPKLFTLCP+PK+ALEVS EQIEDIIRPLGLQRKRS TIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW +
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

A0A6J1EZJ4 methyl-CpG-binding domain protein 4-like protein8.8e-4086.46Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

A0A6J1HWM5 methyl-CpG-binding domain protein 4-like protein isoform X18.8e-4086.46Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +++ ++  +T    AKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

SwissProt top hitse value%identityAlignment
O95243 Methyl-CpG-binding domain protein 46.0e-0931.25Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +I  I   +T    A  V+ K     P  + A       + ++++PLGL   R+ TI + S+ YL + W +  +L G+GKYG D++ IFC   W +
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

Q0IGK1 Methyl-CpG-binding domain protein 4-like protein1.5e-2355.1Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK
        +++ ++  KT     + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRLS  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK

Q9Z2D7 Methyl-CpG-binding domain protein 43.0e-0830.21Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE
        +I  I   +T    A  V+ +     P  + A       + ++++PLGL   R+ TI + S+ YL + W +  +L G+GKYG D++ IFC   W +
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE

Arabidopsis top hitse value%identityAlignment
AT3G07930.3 DNA glycosylase superfamily protein1.0e-2455.1Show/hide
Query:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK
        +++ ++  KT     + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRLS  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Subjt:  MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAA
GTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAG
AAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAACATAAAGCACCTGCTCTGATC
TTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTTCAAAGTTCCTTTCACTTTAACCCGTATGCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAA
GTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAG
AAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAACATAAAGCACCTGCTCTGATC
TTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTTCAAAGTTCCTTTCACTTTAACCCGTATGCCGTAA
Protein sequenceShow/hide protein sequence
MVGEINSMILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHKAPALI
LSEATVDGSTREKLFKVPFTLTRMP