; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G013000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G013000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr11:8870792..8872931
RNA-Seq ExpressionCmoCh11G013000
SyntenyCmoCh11G013000
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025917.1 pol protein [Cucumis melo var. makuwa]2.4e-14073.94Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTKTAHF+ GKSTY   +W QLY+ EIVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF KKGKLSPRF+GPFEILER+G VAYR+ LPP+L  VH+VFHVSMLR+Y
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
          DPTH+++ E L + E+LSYEE+P  ILA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

KAA0025998.1 pol protein [Cucumis melo var. makuwa]3.1e-14073.33Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTK+AHF+ GKSTY   +W QLY+ EIVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF KKGKLSPRF+GPFEILER+G VAYR+ LPP+   VH+VFH+SMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
          DPTHV++ E L + E+LSYEE+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

KAA0046287.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-14172.73Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ+PA LLQPL +P+WKWE V MDF++GFP+T +GF V+WVVVDRLTK+AHF+LGKSTY   +WAQLY+ +IVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ A+GT+L FSTAFHPQTDGQTERLNQ+LEDML+AC+L+FS  WD HL LMEFAYNN+YQATI MTPFEALYG+ CR+ V W EVG Q+L+GPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TN A QKI+ R+ TAQSRQKSYAD+ R+DLEFEVGD VFLKVAPMRGVLRF ++GKLSPRF+GPFEILER+G VAYR+ LPP+L TVH+VFHVSMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
         PDP HV+++E L + E+LSY E+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

KAA0055932.1 pol protein [Cucumis melo var. makuwa]4.8e-14173.03Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTK+AHF+LGKSTY   +W QLY+ EIVRLHG+ VSI+SDRD RFT++FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF  KGKLSPRF+GPFEILER+G VAYR+ LPP+   VH+VFH+SMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
         PDPTHV++ E L + E+LSYEE+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

TYK20443.1 pol protein [Cucumis melo var. makuwa]3.1e-14073.33Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTK+AHF+ GKSTY   +W QLY+ EIVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF KKGKLSPRF+GPFEILER+G VAYR+ LPP+   VH+VFH+SMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
          DPTHV++ E L + E+LSYEE+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ5 Reverse transcriptase1.5e-14073.33Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTK+AHF+ GKSTY   +W QLY+ EIVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF KKGKLSPRF+GPFEILER+G VAYR+ LPP+   VH+VFH+SMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
          DPTHV++ E L + E+LSYEE+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

A0A5A7TP01 Reverse transcriptase1.2e-14073.94Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTKTAHF+ GKSTY   +W QLY+ EIVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF KKGKLSPRF+GPFEILER+G VAYR+ LPP+L  VH+VFHVSMLR+Y
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
          DPTH+++ E L + E+LSYEE+P  ILA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

A0A5A7TWK5 Ty3-gypsy retrotransposon protein2.3e-14172.73Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ+PA LLQPL +P+WKWE V MDF++GFP+T +GF V+WVVVDRLTK+AHF+LGKSTY   +WAQLY+ +IVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ A+GT+L FSTAFHPQTDGQTERLNQ+LEDML+AC+L+FS  WD HL LMEFAYNN+YQATI MTPFEALYG+ CR+ V W EVG Q+L+GPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TN A QKI+ R+ TAQSRQKSYAD+ R+DLEFEVGD VFLKVAPMRGVLRF ++GKLSPRF+GPFEILER+G VAYR+ LPP+L TVH+VFHVSMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
         PDP HV+++E L + E+LSY E+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

A0A5A7UJ81 Reverse transcriptase2.3e-14173.03Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTK+AHF+LGKSTY   +W QLY+ EIVRLHG+ VSI+SDRD RFT++FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF  KGKLSPRF+GPFEILER+G VAYR+ LPP+   VH+VFH+SMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
         PDPTHV++ E L + E+LSYEE+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

A0A5D3BTN0 Reverse transcriptase1.5e-14073.33Show/hide
Query:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW
        +VKAPRQ PAGLLQPL VP WKWE+V MDF++G PKT +G+ V+WVVVDRLTK+AHF+ GKSTY   +W QLY+ EIVRLHG+ VSIVSDRD RFTS+FW
Subjt:  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFW

Query:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ
        + LQ ALGT+L FSTAFHPQTDGQTERLNQILEDML+AC L+FS  WD HL LMEFAYNN+YQATI M PFEALYG+ CR+ V W EVG Q++LGPELVQ
Subjt:  RSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQ

Query:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY
         TNAA QKI+ R+LTAQSRQKSYAD+ R+DLEFEVGD VFLKVAPM+GVLRF KKGKLSPRF+GPFEILER+G VAYR+ LPP+   VH+VFH+SMLRKY
Subjt:  VTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY

Query:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA
          DPTHV++ E L + E+LSYEE+P  +LA
Subjt:  TPDPTHVIEHEMLPLREDLSYEEKPSRILA

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.5e-3933Show/hide
Query:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS
        K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    +   ++ A+++ + ++   G    I++D D  FTSQ W+ 
Subjt:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS

Query:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT
                ++FS  + PQTDGQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    +   E+ +      E  Q T
Subjt:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT

Query:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY
            Q +K+ + T   + K Y DM  +++ EF+ GD V +K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Subjt:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein5.5e-3933Show/hide
Query:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS
        K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    +   ++ A+++ + ++   G    I++D D  FTSQ W+ 
Subjt:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS

Query:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT
                ++FS  + PQTDGQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    +   E+ +      E  Q T
Subjt:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT

Query:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY
            Q +K+ + T   + K Y DM  +++ EF+ GD V +K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Subjt:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein5.5e-3933Show/hide
Query:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS
        K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    +   ++ A+++ + ++   G    I++D D  FTSQ W+ 
Subjt:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS

Query:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT
                ++FS  + PQTDGQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    +   E+ +      E  Q T
Subjt:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT

Query:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY
            Q +K+ + T   + K Y DM  +++ EF+ GD V +K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Subjt:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein5.5e-3933Show/hide
Query:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS
        K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    +   ++ A+++ + ++   G    I++D D  FTSQ W+ 
Subjt:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS

Query:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT
                ++FS  + PQTDGQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    +   E+ +      E  Q T
Subjt:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT

Query:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY
            Q +K+ + T   + K Y DM  +++ EF+ GD V +K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Subjt:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein5.5e-3933Show/hide
Query:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS
        K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    +   ++ A+++ + ++   G    I++D D  FTSQ W+ 
Subjt:  KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRS

Query:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT
                ++FS  + PQTDGQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    +   E+ +      E  Q T
Subjt:  LQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVT

Query:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY
            Q +K+ + T   + K Y DM  +++ EF+ GD V +K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Subjt:  NAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTGGGTCGAGGAGCAGTCACACTCTGGTTCGGATCGACTATTGTAGAAGGCTATTGAGCCGGGCTGGTTGTTGGGCCTCGATTTACTGGACTGGCCCGCATGT
ATTTGGGTTGCAGGCTGGTTCGATTGGACCGTGGGTCTGGTCTCAGGTTGGTTCAGCTGAACCGTGGCTTCTGGGCTGGTTTGAGGTGAAGGCCCCGAGGCAGCGCCCAG
CAGGATTGCTACAGCCCCTAGATGTTCCTCAGTGGAAATGGGAAGCAGTCTGTATGGATTTCGTCTCGGGTTTTCCAAAGACAAAGCAGGGTTTCAACGTCATGTGGGTT
GTTGTGGACAGACTGACCAAGACGGCCCACTTCATTCTAGGAAAGTCTACATATCGAGTGGATCGGTGGGCTCAATTATACATTAAGGAGATAGTACGCCTGCACGGGAT
ACTAGTGTCCATAGTATCAGACCGGGACATCAGGTTCACCTCTCAGTTCTGGAGAAGTCTCCAGAAAGCACTAGGAACTCAGTTGAGGTTCAGTACAGCGTTCCATCCTC
AAACGGACGGACAGACTGAAAGGCTGAACCAGATTTTAGAGGATATGTTGCAAGCCTGTTCCTTAGATTTCTCTAGGTGCTGGGACGAACATCTGTCTTTAATGGAGTTT
GCCTATAATAATAATTATCAAGCGACCATTCAGATGACCCCCTTTGAGGCACTGTATGGGCGTAGGTGTCGAACACTAGTGTTTTGGGAAGAGGTAGGCACGCAGCAACT
ACTGGGACCAGAGTTGGTCCAAGTCACCAACGCAGCGGAGCAGAAAATCAAGCAGAGGATACTCACCGCACAGAGCCGACAGAAAAGCTATGCAGATATGTGTAGAAGGG
ACCTCGAATTTGAGGTGGGTGACCACGTGTTCCTGAAGGTAGCCCCTATGAGGGGGGTGTTGAGGTTCGGAAAGAAAGGGAAATTGAGCCCAAGGTTCATAGGCCCCTTC
GAGATTTTAGAAAGAGTTGGGGCTGTGGCTTACAGAATTGTCCTACCACCGAACCTTGTCACCGTGCACAATGTGTTCCACGTATCCATGCTGCGAAAGTACACTCCAGA
CCCTACTCATGTAATCGAGCATGAGATGCTTCCTCTTCGGGAAGATTTATCTTACGAGGAGAAGCCTAGCAGAATTTTGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTGGGTCGAGGAGCAGTCACACTCTGGTTCGGATCGACTATTGTAGAAGGCTATTGAGCCGGGCTGGTTGTTGGGCCTCGATTTACTGGACTGGCCCGCATGT
ATTTGGGTTGCAGGCTGGTTCGATTGGACCGTGGGTCTGGTCTCAGGTTGGTTCAGCTGAACCGTGGCTTCTGGGCTGGTTTGAGGTGAAGGCCCCGAGGCAGCGCCCAG
CAGGATTGCTACAGCCCCTAGATGTTCCTCAGTGGAAATGGGAAGCAGTCTGTATGGATTTCGTCTCGGGTTTTCCAAAGACAAAGCAGGGTTTCAACGTCATGTGGGTT
GTTGTGGACAGACTGACCAAGACGGCCCACTTCATTCTAGGAAAGTCTACATATCGAGTGGATCGGTGGGCTCAATTATACATTAAGGAGATAGTACGCCTGCACGGGAT
ACTAGTGTCCATAGTATCAGACCGGGACATCAGGTTCACCTCTCAGTTCTGGAGAAGTCTCCAGAAAGCACTAGGAACTCAGTTGAGGTTCAGTACAGCGTTCCATCCTC
AAACGGACGGACAGACTGAAAGGCTGAACCAGATTTTAGAGGATATGTTGCAAGCCTGTTCCTTAGATTTCTCTAGGTGCTGGGACGAACATCTGTCTTTAATGGAGTTT
GCCTATAATAATAATTATCAAGCGACCATTCAGATGACCCCCTTTGAGGCACTGTATGGGCGTAGGTGTCGAACACTAGTGTTTTGGGAAGAGGTAGGCACGCAGCAACT
ACTGGGACCAGAGTTGGTCCAAGTCACCAACGCAGCGGAGCAGAAAATCAAGCAGAGGATACTCACCGCACAGAGCCGACAGAAAAGCTATGCAGATATGTGTAGAAGGG
ACCTCGAATTTGAGGTGGGTGACCACGTGTTCCTGAAGGTAGCCCCTATGAGGGGGGTGTTGAGGTTCGGAAAGAAAGGGAAATTGAGCCCAAGGTTCATAGGCCCCTTC
GAGATTTTAGAAAGAGTTGGGGCTGTGGCTTACAGAATTGTCCTACCACCGAACCTTGTCACCGTGCACAATGTGTTCCACGTATCCATGCTGCGAAAGTACACTCCAGA
CCCTACTCATGTAATCGAGCATGAGATGCTTCCTCTTCGGGAAGATTTATCTTACGAGGAGAAGCCTAGCAGAATTTTGGCTTGA
Protein sequenceShow/hide protein sequence
MCVGSRSSHTLVRIDYCRRLLSRAGCWASIYWTGPHVFGLQAGSIGPWVWSQVGSAEPWLLGWFEVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWV
VVDRLTKTAHFILGKSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEF
AYNNNYQATIQMTPFEALYGRRCRTLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVFLKVAPMRGVLRFGKKGKLSPRFIGPF
EILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKYTPDPTHVIEHEMLPLREDLSYEEKPSRILA