; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G013010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G013010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr11:8881267..8882928
RNA-Seq ExpressionCmoCh11G013010
SyntenyCmoCh11G013010
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930203.1 uncharacterized protein LOC111436721 [Cucurbita moschata]1.6e-13782.97Show/hide
Query:  MALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPP
        M LAAIYQAI EEMLFLLAEK+T KE WQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESET DDYAARLT VVNKI TFGDKFEEAY VKKFLRSVP 
Subjt:  MALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPP

Query:  KFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQE
        KFLHI S IEQFADLKV+TMEEVIGRLKAY+ERIGG+K+NAE VLLTQGEWKAKE             RSDNG HSRGRGRS RWRGRGHGR NDS +QE
Subjt:  KFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQE

Query:  KKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNN
        KK DKSKV+CYNCQ LGHY S+C KVKCYNCQKIGHYAS  RSKK EDQAHL E Q DEDEPALLT QVCEVRTL S ELTEM LYEEKVVP EIEK NN
Subjt:  KKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNN

Query:  IWFLDTGASNHMTGCRS
         WFLDTGASNHMTGCRS
Subjt:  IWFLDTGASNHMTGCRS

XP_022932813.1 uncharacterized protein LOC111439274 [Cucurbita moschata]2.1e-12684.38Show/hide
Query:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK
        I+STESLDSL+ERKDQMALAAIYQAIPEEMLFLLAEK+TAKEAWQTLKTIHVGAERVKEAKIQTL  EFE+MNMKESETIDDYAARLT VVNKI TFGDK
Subjt:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK

Query:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGR
        FEEA  VKKFLRSVP KFLHIASAIEQF DLKVMTMEEVIGRLKAY+ERIGG+KENAEHVL T+GEWKAKE             RS+NGGHSRGRGRSGR
Subjt:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGR

Query:  WRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEV
        WRGRGHGR NDS HQEKK DKSKV+ YNCQ LGHYAS+CRKVKCYNCQKIGHY S CRSKK EDQAHL E Q DEDE  LLTAQVCEV
Subjt:  WRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEV

XP_023520946.1 uncharacterized protein LOC111784490 [Cucurbita pepo subsp. pepo]3.2e-19971.94Show/hide
Query:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK
        IESTE LDSLDERKDQM LAAIYQAIPEEMLFLLAEK+ AKEAW+TLKTIHV AERVKEAKIQTLKIEFEIM MKESETIDDYAARL EVVNKI TFGDK
Subjt:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK

Query:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF
        FEEAY VKKF+RSVP KFLHI SAIE+FADLKVMTMEEVIG     +ERIGG+KENAEHVLLTQGEWK K+RSDNGGHSRGRGRSGRWRGRGHGR NDSF
Subjt:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF

Query:  HQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASD-------------CRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMA
        HQEKKADKSKVRCYNCQ LGHYAS+CRK+KCYNCQKIGHYASD             CRSKK E+QAHL ETQSDEDEPALLTAQVCEVRTLG PELTEMA
Subjt:  HQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASD-------------CRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMA

Query:  LYEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMIDEEKIDGFVKIESEKKTEKREEKKSD
        LYEEKVV  EIEK NNIWFLDT ASNHMTG RSWFSEL E VTGTVKFGDGSL EIK RGDVKAASVKKTEKMI+EEKIDG VKIES+KK          
Subjt:  LYEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMIDEEKIDGFVKIESEKKTEKREEKKSD

Query:  GEKIVGIVKFESEERGDAVVAEVQNVASEVAKAKKIKEKEVTYDGEKKDKEDGNNDGAIEKQIAGETKA--EKEKEAIVSGSAIE---------------
                                                     E + +E+   +     ++AGETKA  EKEKEAIVSGSAIE               
Subjt:  GEKIVGIVKFESEERGDAVVAEVQNVASEVAKAKKIKEKEVTYDGEKKDKEDGNNDGAIEKQIAGETKA--EKEKEAIVSGSAIE---------------

Query:  -VAQVIKPVEEKPLVGQVEQVIKTIDEKQLPIERKTKKKEGRDNGGSFHPMKQSIL
         V QVIKP+EEKPL GQVEQVIKT+DEKQLPIERKT+K EG DNG +FHP+K+SIL
Subjt:  -VAQVIKPVEEKPLVGQVEQVIKTIDEKQLPIERKTKKKEGRDNGGSFHPMKQSIL

XP_023535309.1 uncharacterized protein LOC111796783 [Cucurbita pepo subsp. pepo]6.9e-21077.14Show/hide
Query:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK
        IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEK+TAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKI TFGDK
Subjt:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK

Query:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF
        FEEAY VKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAY+ERIGG+KENAEHVLLTQGEWK KERSDNGGHSRGRGRSGRWRGRGHGR NDSF
Subjt:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF

Query:  HQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEK
        H EKK DKSKVRCYNCQ LGHYAS+CRKV+CYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDE ALLT QVCEVRTL SPELTEMALYEEKVVP EIEK
Subjt:  HQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEK

Query:  VNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMIDEEKIDGFVKIESEKKTEKREEKKSDGEKIVGIVKFESE
                      + G +  +  L + V G  +  D                  + EKMIDEEKIDG VKIESEKKTEKREEKKSDGEKIVG VKFESE
Subjt:  VNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMIDEEKIDGFVKIESEKKTEKREEKKSDGEKIVGIVKFESE

Query:  ERGDAVVAEVQNVASEVAKAKKIKEKEVTYDGEKKDKEDGNNDGAIEKQIAGETKA--EKEKEAIVSGSAIEVAQVIKPVEEKPLVGQVEQVIKTIDEKQ
        E+ D V+AEVQNVA+EV                                 AGETKA  EKEKEAIVS SAIEVAQVIKPVEEK L GQVEQVIKT++EKQ
Subjt:  ERGDAVVAEVQNVASEVAKAKKIKEKEVTYDGEKKDKEDGNNDGAIEKQIAGETKA--EKEKEAIVSGSAIEVAQVIKPVEEKPLVGQVEQVIKTIDEKQ

Query:  LPIERKTKKKEGRDNGGSFHPMKQSILWRRQLLVKEYG
        LPI RKT+KKEG DNG SFHP+K+SILW+RQ+LVKEYG
Subjt:  LPIERKTKKKEGRDNGGSFHPMKQSILWRRQLLVKEYG

XP_023550513.1 uncharacterized protein LOC111808631 [Cucurbita pepo subsp. pepo]9.5e-13585.81Show/hide
Query:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK
        IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAE +TAKEAWQ LKTIHVGAERVKEAKIQTLKIEFEIMNMKESE IDDY ARLTEVVNKI TFGDK
Subjt:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK

Query:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF
        FEEAY VKKF   V PKFLHIASAIEQFADLKVMTMEEVI RLKAY ERIGG+KENAEHV LTQGEWK K   DNGGHSRGRG SGRWRGRGHG  NDSF
Subjt:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF

Query:  HQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWED-------------QAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMA
        +QEKKADKSKVRCYNCQ LGHYAS+CRKVKCYNCQKIGHYASDCRSKK ED             QAHL ETQSDEDEP LL AQVCEVR LGSPELTEMA
Subjt:  HQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWED-------------QAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMA

Query:  LYE
        LYE
Subjt:  LYE

TrEMBL top hitse value%identityAlignment
A0A6J1EBX7 uncharacterized protein LOC1114326211.5e-9891.47Show/hide
Query:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK
        IESTESLDSLDER DQMALAAIYQAIPEEMLFLLAEK+TAKEAWQ LKTIHVGAERVKEAK QTLK EFEIMNMKESETIDD  ARLTEV+NKI TFGDK
Subjt:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK

Query:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF
        FEEA  VKKFL SVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAY+ERIGG+KEN EHVLLTQGEWKAKERSDNGGHSRGRG SGRWRGRGHGR NDSF
Subjt:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSF

Query:  HQEKKADKSKV
        HQEKKADKSK+
Subjt:  HQEKKADKSKV

A0A6J1EUE1 uncharacterized protein LOC1114367217.6e-13882.97Show/hide
Query:  MALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPP
        M LAAIYQAI EEMLFLLAEK+T KE WQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESET DDYAARLT VVNKI TFGDKFEEAY VKKFLRSVP 
Subjt:  MALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPP

Query:  KFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQE
        KFLHI S IEQFADLKV+TMEEVIGRLKAY+ERIGG+K+NAE VLLTQGEWKAKE             RSDNG HSRGRGRS RWRGRGHGR NDS +QE
Subjt:  KFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQE

Query:  KKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNN
        KK DKSKV+CYNCQ LGHY S+C KVKCYNCQKIGHYAS  RSKK EDQAHL E Q DEDEPALLT QVCEVRTL S ELTEM LYEEKVVP EIEK NN
Subjt:  KKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNN

Query:  IWFLDTGASNHMTGCRS
         WFLDTGASNHMTGCRS
Subjt:  IWFLDTGASNHMTGCRS

A0A6J1EY27 uncharacterized protein LOC1114392751.5e-8880.65Show/hide
Query:  MNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE
        MNMKESETIDDYAARLT VVNKI TFGDKFEEA  VKKFL SVP KFLHIASAIEQF DLKVMTMEEVIGRLKAY+ERIGG+KENAEHVL T+GEWKAKE
Subjt:  MNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE

Query:  -------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAET
                     RS+NGGHSRGRGRSGRWRGRGHGR NDS H+EKK DKSKV+ YNCQ LGHYAS+CRKVKCYNCQKIGHY   CRSKK EDQAHL E 
Subjt:  -------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAET

Query:  QSDEDEPALLTAQVCEV
        Q DEDE  LLTAQVCEV
Subjt:  QSDEDEPALLTAQVCEV

A0A6J1F2T3 uncharacterized protein LOC1114392741.0e-12684.38Show/hide
Query:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK
        I+STESLDSL+ERKDQMALAAIYQAIPEEMLFLLAEK+TAKEAWQTLKTIHVGAERVKEAKIQTL  EFE+MNMKESETIDDYAARLT VVNKI TFGDK
Subjt:  IESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDK

Query:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGR
        FEEA  VKKFLRSVP KFLHIASAIEQF DLKVMTMEEVIGRLKAY+ERIGG+KENAEHVL T+GEWKAKE             RS+NGGHSRGRGRSGR
Subjt:  FEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGR

Query:  WRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEV
        WRGRGHGR NDS HQEKK DKSKV+ YNCQ LGHYAS+CRKVKCYNCQKIGHY S CRSKK EDQAHL E Q DEDE  LLTAQVCEV
Subjt:  WRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEV

A0A6J1G536 uncharacterized protein LOC1114508442.6e-7771.81Show/hide
Query:  MEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHY
        MEE+I RLKAY+ERI G+KENAEHVLLTQGEWKAKE             RSDNGGHSRGRG S RWRGRGHGR  DS HQEKK DKS             
Subjt:  MEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKE-------------RSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHY

Query:  ASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWF
                     KIGHYAS CRSKK EDQAHL ETQ DEDEPALLTAQVCEVRTLGSPEL EMALYEEKVVP EIEK NN WFLDTGA+NHMT CRSWF
Subjt:  ASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWF

Query:  SELKESVTGTVKFGDGSLGEIKGRGDV
         EL ESVT TVKFGDGSL EIKGRGDV
Subjt:  SELKESVTGTVKFGDGSLGEIKGRGDV

SwissProt top hitse value%identityAlignment
P62633 Cellular nucleic acid-binding protein8.1e-0439Show/hide
Query:  GEWKAKERSDNGGHSRG---RGRSGRWRGRGHG-----------RRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVK------CYNCQKIGHYASDC
        G W A+E    GG  RG   RGR G    RG             R  +S H  K  D  +  CYNC   GH A DC++ K      CYNC K GH A DC
Subjt:  GEWKAKERSDNGGHSRG---RGRSGRWRGRGHG-----------RRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVK------CYNCQKIGHYASDC

Q02836 Gag-Pol polyprotein1.3e-0440.43Show/hide
Query:  EKKADKSKVRCYNCQDLGHYASDC---RKVKCYNCQKIGHYASDCRS
        +KK  +  ++C+NC   GH   +C   R++KC+ C KIGH A DC++
Subjt:  EKKADKSKVRCYNCQDLGHYASDC---RKVKCYNCQKIGHYASDCRS

Q02843 Gag polyprotein1.3e-0440.43Show/hide
Query:  EKKADKSKVRCYNCQDLGHYASDC---RKVKCYNCQKIGHYASDCRS
        +KK  +  ++C+NC   GH   +C   R++KC+ C KIGH A DC++
Subjt:  EKKADKSKVRCYNCQDLGHYASDC---RKVKCYNCQKIGHYASDCRS

Q3T0Q6 Cellular nucleic acid-binding protein4.8e-0440.21Show/hide
Query:  GEWKAKERSDNGGHSRGRGRSGRWRGRGHG-----------RRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVK------CYNCQKIGHYASDC
        G W A+E    G    GRGR  R RGRG             R  +S H  K  D  +  CYNC   GH A DC++ K      CYNC K GH A DC
Subjt:  GEWKAKERSDNGGHSRGRGRSGRWRGRGHG-----------RRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVK------CYNCQKIGHYASDC

Q8WW36 Zinc finger CCHC domain-containing protein 131.6e-0446.67Show/hide
Query:  HQEKKADKSK-VRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDC
        H  +  D+ K  +CY+C  LGH   DC +VKCY C +IGH A +C
Subjt:  HQEKKADKSK-VRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDC

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGC
AGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTG
TAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAA
ATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGA
TTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAAT
GGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAG
AAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTA
TGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAA
CTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAAT
CACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAA
GGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCG
ATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATA
AAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAA
AGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAA
AGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAG
GAATATGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGC
AGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTG
TAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAA
ATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGA
TTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAAT
GGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAG
AAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTA
TGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAA
CTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAAT
CACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAA
GGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCG
ATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATA
AAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAA
AGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAA
AGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAG
GAATATGGTTAG
Protein sequenceShow/hide protein sequence
MGYEDEGLFACSRGVGPIESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNK
IHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSGRWRGRGHGRRNDSFHQE
KKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNNIWFLDTGASN
HMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMIDEEKIDGFVKIESEKKTEKREEKKSDGEKIVGIVKFESEERGDAVVAEVQNVASEVAKAKKI
KEKEVTYDGEKKDKEDGNNDGAIEKQIAGETKAEKEKEAIVSGSAIEVAQVIKPVEEKPLVGQVEQVIKTIDEKQLPIERKTKKKEGRDNGGSFHPMKQSILWRRQLLVK
EYG