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CmoCh11G013040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G013040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L39
Genome locationCmo_Chr11:8922862..8924723
RNA-Seq ExpressionCmoCh11G013040
SyntenyCmoCh11G013040
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5513865.1 hypothetical protein DKX38_027771 [Salix brachista]1.3e-1370.49Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIS------FKCIMRNEGTGAAPSLDFE
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI       F+C   + GTG   SLD E
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIS------FKCIMRNEGTGAAPSLDFE

XP_024459099.1 uncharacterized protein LOC7479545 isoform X1 [Populus trichocarpa]3.2e-1278.43Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG

XP_024459100.1 uncharacterized protein LOC7479545 isoform X2 [Populus trichocarpa]3.2e-1278.43Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG

XP_024459101.1 uncharacterized protein LOC7479545 isoform X3 [Populus trichocarpa]3.2e-1278.43Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG

XP_024459103.1 uncharacterized protein LOC7479545 isoform X5 [Populus trichocarpa]3.2e-1278.43Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG

TrEMBL top hitse value%identityAlignment
A0A1L6K4G8 Uncharacterized protein3.5e-1282.98Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRN
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRN

A0A5N5J8N4 Uncharacterized protein6.3e-1470.49Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIS------FKCIMRNEGTGAAPSLDFE
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI       F+C   + GTG   SLD E
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIS------FKCIMRNEGTGAAPSLDFE

A0A6J5TP45 Uncharacterized protein2.0e-1257.33Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNE------------GTGAAPSLDFEFISGTPVW
        MPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTI       +             GTGAAPS   E +    +W
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNE------------GTGAAPSLDFEFISGTPVW

A0A6J5W488 Uncharacterized protein2.0e-1257.33Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNE------------GTGAAPSLDFEFISGTPVW
        MPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTI       +             GTGAAPS   E +    +W
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNE------------GTGAAPSLDFEFISGTPVW

A0A6N2K479 Aspartate transaminase1.5e-1276.36Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNEGTGAAPSLDFE
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIS        GTG   SLD E
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNEGTGAAPSLDFE

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-11.9e-1276.74Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTI +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

P51425 60S ribosomal protein L393.9e-1379.07Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

P51426 60S ribosomal protein L39-23.9e-1379.07Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

Q5SMI4 60S ribosomal protein L39-31.1e-1276.74Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

Q6KAJ8 60S ribosomal protein L39-13.9e-1379.07Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein1.2e-0977.14Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        IKKKL KKMRQNRPIPHWIRLRTDNTI +    R+
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

AT3G02190.1 Ribosomal protein L39 family protein4.5e-1272.09Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN I +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN

AT4G31985.1 Ribosomal protein L39 family protein1.4e-1376.74Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTI +    R+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGTTT
TAAATGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATAT
TCATGTGGATGAGCTGA
mRNA sequenceShow/hide mRNA sequence
GCCCAAACTCGACAAATTCTCCTAAAACCCTAATCCATGGTCTTTCCCGACTAGAACGGCCGCTTCTTCACTTTGCTCTCGCAGGTAATTAGTTGTAGGGGTGCAGTCGT
TGGCTGATTCTTGAATATCCAAGATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTG
AGGACCGACAATACCATCAGTTTTAAATGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGTTCATTTCTGGTACCCCAGTTTGGAATTTTAT
TCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTT
TTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAA
TTTGTATGGTGAAAATTAATATATAAATTCCTACAAAAT
Protein sequenceShow/hide protein sequence
MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNEGTGAAPSLDFEFISGTPVWNFILILIAQIFMWMS