CuGenDBv2

Gene ID	CmoCh11G013250
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Genome location	Cmo_Chr11:9155725..9157487
RNA-Seq Expression	CmoCh11G013250
Synteny	CmoCh11G013250
Gene Ontology terms	GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (biological process) GO:0050992 - dimethylallyl diphosphate biosynthetic process (biological process) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity (molecular function)
InterPro domains	IPR003451 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_010028563.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Eucalyptus grandis]

1.5e-43

95.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNR+AYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

XP_022136222.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Momordica charantia]

8.6e-44

96.67

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

XP_022952979.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita moschata]

1.9e-43

95.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

XP_022972347.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita maxima]

4.3e-43

94.44

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVE+ENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

XP_038888882.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Benincasa hispida]

8.6e-44

96.67

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJM1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

4.6e-43

95.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKG ITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

A0A6A1V3D3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

3.5e-43

92.22

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE K+DLMLV+GGWNSS+TSHLQEIAEERGIPSYW+DSEQR+GPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

A0A6J1C4Z2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

4.2e-44

96.67

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

A0A6J1GNC1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

9.3e-44

95.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

A0A6J1I4K4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

2.1e-43

94.44

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVE+ENWLPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

SwissProt top hits

e value

%identity

Alignment

B8HWD3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

1.1e-30

68.89

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAM+KLVE  LDLM+V+GG+NSS+T+HLQEI+ ER IPSY IDS  RIGPGNR+ +K  H  L  KENWLP+GPI +G+TSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

Q31S64 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

3.6e-29

65.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAM++LVE  LDL++V+GG+NSS+T+HLQEIA ER IPS+ ID+ +RIGPGNRI +K  H +L   E WLP GP+TIG+TSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

Q5N249 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

3.6e-29

65.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAM++LVE  LDL++V+GG+NSS+T+HLQEIA ER IPS+ ID+ +RIGPGNRI +K  H +L   E WLP GP+TIG+TSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

Q6AVG6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

1.4e-41

85.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDAMY+LV+ K+DL+LVVGGWNSS+TSHLQEI E  GIPSYWIDSEQRIGPGN+I+YKLNHGELVEKENWLP+GPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

Q94B35 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic

4.2e-41

85.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDA+Y+LVE K+DLMLVVGGWNSS+TSHLQEI+E RGIPSYWIDSE+RIGPGN+IAYKL++GELVEKEN+LPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

Arabidopsis top hits

e value

%identity

Alignment

AT4G34350.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

2.9e-42

85.56

Show/hide

Query:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP
        +ERQDA+Y+LVE K+DLMLVVGGWNSS+TSHLQEI+E RGIPSYWIDSE+RIGPGN+IAYKL++GELVEKEN+LPKGPITIGVTSGASTP
Subjt:  EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTCTCACTCGAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCA
AGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATCATGGGGAGTTAGTTGAGA
AGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

mRNA sequence

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Protein sequence

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MFSLEERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTPR

CmoCh11G013250 (gene) of Cucurbita moschata (Rifu) v1 genome