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CmoCh11G013450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G013450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontype IV secretion system protein virB10-like
Genome locationCmo_Chr11:9320893..9321282
RNA-Seq ExpressionCmoCh11G013450
SyntenyCmoCh11G013450
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571994.1 hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4474.44Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLD----PPPHLRPPPPIEAIPVS
        MS P+DQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY A YDVE+WVEKKCASCLDGSLD    PPPHLR PPP++A+PV 
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLD----PPPHLRPPPPIEAIPVS

Query:  EPLGGPPNIKEGGDGDRERENLQSVAPGSGGES
        EPLGGPP IK+G D   +RENLQS APG+GGES
Subjt:  EPLGGPPNIKEGGDGDRERENLQSVAPGSGGES

KAG6588645.1 hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sororia]1.3e-6396.9Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
        MSVP+DQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA YDVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPVSEPLG
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG

Query:  GPPNIKEGGDGDRERENLQSVAPGSGGES
         PPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  GPPNIKEGGDGDRERENLQSVAPGSGGES

XP_022927713.1 uncharacterized protein LOC111434531 [Cucurbita moschata]8.3e-66100Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
        MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG

Query:  GPPNIKEGGDGDRERENLQSVAPGSGGES
        GPPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  GPPNIKEGGDGDRERENLQSVAPGSGGES

XP_022989510.1 uncharacterized protein LOC111486567 [Cucurbita maxima]3.6e-6193.8Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
        MSVPLDQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA YDVEDWVEKKCA+CLDGSLDPPP LRPPPPIEAIPV+EPLG
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG

Query:  GPPNIKEGGDGDRERENLQSVAPGSGGES
        GPPNIKE GDGD+ERENLQSV PGSGGES
Subjt:  GPPNIKEGGDGDRERENLQSVAPGSGGES

XP_023530142.1 uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo]7.3e-6296.12Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
        MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA YDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPV+EPLG
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG

Query:  GPPNIKEG--GDGDRERENLQSVAPGSGG
        GPPNIKEG  GDGDRERENLQSV PGSGG
Subjt:  GPPNIKEG--GDGDRERENLQSVAPGSGG

TrEMBL top hitse value%identityAlignment
A0A1S3C1T9 type IV secretion system protein virB10-like2.5e-4470.8Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLD-------PPPHLRPPPPIEAI
        MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY A YDVEDWVEKKCASCLDGSLD       PPPHLR PPP++++
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLD-------PPPHLRPPPPIEAI

Query:  PVSEPLGG-PPNIKEGGDGDRERENLQSVAPGSGGES
        PV+EPLGG PP IK+G D D + ENLQS APG+GGES
Subjt:  PVSEPLGG-PPNIKEGGDGDRERENLQSVAPGSGGES

A0A5A7SPN0 Type IV secretion system protein virB10-like2.5e-4470.8Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLD-------PPPHLRPPPPIEAI
        MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY A YDVEDWVEKKCASCLDGSLD       PPPHLR PPP++++
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLD-------PPPHLRPPPPIEAI

Query:  PVSEPLGG-PPNIKEGGDGDRERENLQSVAPGSGGES
        PV+EPLGG PP IK+G D D + ENLQS APG+GGES
Subjt:  PVSEPLGG-PPNIKEGGDGDRERENLQSVAPGSGGES

A0A6J1ELS6 uncharacterized protein LOC1114345314.0e-66100Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
        MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG

Query:  GPPNIKEGGDGDRERENLQSVAPGSGGES
        GPPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  GPPNIKEGGDGDRERENLQSVAPGSGGES

A0A6J1IBA8 uncharacterized protein LOC1114709401.9e-4474.62Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPP---HLRPPPPIEAIPVSE
        MS P DQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY A YDVE+WVEKKCASCLDGSLDPPP   HLR PPP++A+PV E
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPP---HLRPPPPIEAIPVSE

Query:  PLGGPPNIKEGGDGDRERENLQSVAPGSGG
        PLGGPP IK+G   D +RENLQS APG+GG
Subjt:  PLGGPPNIKEGGDGDRERENLQSVAPGSGG

A0A6J1JMK0 uncharacterized protein LOC1114865671.8e-6193.8Show/hide
Query:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG
        MSVPLDQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA YDVEDWVEKKCA+CLDGSLDPPP LRPPPPIEAIPV+EPLG
Subjt:  MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLG

Query:  GPPNIKEGGDGDRERENLQSVAPGSGGES
        GPPNIKE GDGD+ERENLQSV PGSGGES
Subjt:  GPPNIKEGGDGDRERENLQSVAPGSGGES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G26520.1 unknown protein3.7e-1134.43Show/hide
Query:  SVPLDQLQPPP-------SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIP
        S+PL   QPPP       S++       ++GP IAV  V+++L  +A +IGR+C G+ + GY   YD+E W E +C SC+DG + P      P P    P
Subjt:  SVPLDQLQPPP-------SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIP

Query:  VSEPLGGPPNIKEGGDGDRERE
        +     G     EG   D + E
Subjt:  VSEPLGGPPNIKEGGDGDRERE

AT3G57500.1 unknown protein1.2e-0936.36Show/hide
Query:  DQLQPPPSAAAIHPA----------QGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSL-------DPPPHLRPPP
        DQL   P+   I P             S+  ++ VLAVI+IL  +AG+  R+C GR +  +   +D+E WVE+KC SC+D  +        PPP   PPP
Subjt:  DQLQPPPSAAAIHPA----------QGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSL-------DPPPHLRPPP

Query:  PIEAIPVSEP
        P  A   S+P
Subjt:  PIEAIPVSEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCCATACACCCCGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCAGTGATTTCC
ATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCAGTACGACGTCGAAGATTGGGTCGAGAAGAAATGT
GCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGGGCCGCCGAACATC
AAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATCTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCCATACACCCCGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCAGTGATTTCC
ATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCAGTACGACGTCGAAGATTGGGTCGAGAAGAAATGT
GCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGGGCCGCCGAACATC
AAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATCTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA
Protein sequenceShow/hide protein sequence
MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNI
KEGGDGDRERENLQSVAPGSGGES