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CmoCh11G013480 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G013480
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionarmadillo repeat-containing protein 6
Genome locationCmo_Chr11:9357479..9358756
RNA-Seq ExpressionCmoCh11G013480
SyntenyCmoCh11G013480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571992.1 Armadillo repeat-containing protein 6, partial [Cucurbita argyrosperma subsp. sororia]5.9e-1645.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  NEE     I 
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPS+C RAVASALK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

XP_016901666.1 PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo]1.0e-1545.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  N+E     IA
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPSDCE AVAS LK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

XP_022927820.1 uncharacterized protein LOC111434596 [Cucurbita moschata]3.5e-2460.68Show/hide
Query:  MGPTDALQDAIESLTLQCVDL----------------------------------------------SEMCELNEEWDIIALRNGGLELLCYLRSKIPSD
        MGPTDALQDAIESLTLQCVDL                                              SEMCELNEEWDIIALRNGGLELLCYLRSKIPSD
Subjt:  MGPTDALQDAIESLTLQCVDL----------------------------------------------SEMCELNEEWDIIALRNGGLELLCYLRSKIPSD

Query:  CERAVASALKAMGLLLQ
        CERAVASALKAMGLLLQ
Subjt:  CERAVASALKAMGLLLQ

XP_022952405.1 armadillo repeat-containing protein 6 [Cucurbita moschata]5.9e-1645.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  NEE     I 
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPS+C RAVASALK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

XP_023511541.1 armadillo repeat-containing protein 6 [Cucurbita pepo subsp. pepo]5.9e-1645.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  NEE     I 
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPS+C RAVASALK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

TrEMBL top hitse value%identityAlignment
A0A1S4E0B2 armadillo repeat-containing protein 64.9e-1645.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  N+E     IA
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPSDCE AVAS LK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

A0A5D3C632 Armadillo repeat-containing protein 64.9e-1645.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  N+E     IA
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPSDCE AVAS LK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

A0A6J1EQ01 uncharacterized protein LOC1114345961.7e-2460.68Show/hide
Query:  MGPTDALQDAIESLTLQCVDL----------------------------------------------SEMCELNEEWDIIALRNGGLELLCYLRSKIPSD
        MGPTDALQDAIESLTLQCVDL                                              SEMCELNEEWDIIALRNGGLELLCYLRSKIPSD
Subjt:  MGPTDALQDAIESLTLQCVDL----------------------------------------------SEMCELNEEWDIIALRNGGLELLCYLRSKIPSD

Query:  CERAVASALKAMGLLLQ
        CERAVASALKAMGLLLQ
Subjt:  CERAVASALKAMGLLLQ

A0A6J1GLN5 armadillo repeat-containing protein 62.9e-1645.83Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  NEE     I 
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPS+C RAVASALK M LLLQ LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

A0A6J1I9P1 armadillo repeat-containing protein 61.4e-1544.44Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA
        D VVRENV+DLGM PT+ALQDAIE+LTLQ VDL                                                   SE+C  NEE     I 
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL---------------------------------------------------SEMCELNEEWD--IIA

Query:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF
        LRNGGLELLC L  KIPS+C+R VASALK M LL Q LH +++F
Subjt:  LRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33945.1 ARM repeat superfamily protein6.5e-0563.64Show/hide
Query:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL
        D +VRENV+DLGM P++AL+DA+ +L LQ VDL
Subjt:  DGVVRENVDDLGMGPTDALQDAIESLTLQCVDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCCGACGGCGTGGTAAGAGAGAATGTGGATGATCTGGGGATGGGTCCGACTGATGCTCTCCAGGATGCAATCGAATCCTTAACTCTTCAATGCGTTGATCTCTC
AGAGATGTGTGAATTGAATGAGGAATGGGACATAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCAAGATTCCGAGTGATTGCGAGCGTGCTG
TTGCTTCCGCTTTAAAGGCTATGGGGCTACTACTTCAAGCATTACATGTTTCAAAACTATTCTCCATTGACGTTAGCAGCATTACATGTCTCAAACTATTGTCTATACCC
TTGGGTATGTATGGTGCAACAATTGCCTGCCCTGCCCTACTTCCTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCCGACGGCGTGGTAAGAGAGAATGTGGATGATCTGGGGATGGGTCCGACTGATGCTCTCCAGGATGCAATCGAATCCTTAACTCTTCAATGCGTTGATCTCTC
AGAGATGTGTGAATTGAATGAGGAATGGGACATAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCAAGATTCCGAGTGATTGCGAGCGTGCTG
TTGCTTCCGCTTTAAAGGCTATGGGGCTACTACTTCAAGCATTACATGTTTCAAAACTATTCTCCATTGACGTTAGCAGCATTACATGTCTCAAACTATTGTCTATACCC
TTGGGTATGTATGGTGCAACAATTGCCTGCCCTGCCCTACTTCCTACTTAA
Protein sequenceShow/hide protein sequence
MTSDGVVRENVDDLGMGPTDALQDAIESLTLQCVDLSEMCELNEEWDIIALRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQALHVSKLFSIDVSSITCLKLLSIP
LGMYGATIACPALLPT