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CmoCh11G013660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G013660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCold regulated protein 27, putative isoform 2
Genome locationCmo_Chr11:9554449..9555801
RNA-Seq ExpressionCmoCh11G013660
SyntenyCmoCh11G013660
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588664.1 hypothetical protein SDJN03_17229, partial [Cucurbita argyrosperma subsp. sororia]8.3e-6493.48Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSS TVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG-----SEFPYLI
        QKMRCRPSMPHISSSEVRQYIHSKSG     SE P L+
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG-----SEFPYLI

XP_022927649.1 uncharacterized protein LOC111434473 isoform X1 [Cucurbita moschata]3.7e-64100Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

XP_022927650.1 uncharacterized protein LOC111434473 isoform X2 [Cucurbita moschata]3.5e-6299.21Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAV THWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

XP_022988936.1 uncharacterized protein LOC111486142 isoform X1 [Cucurbita maxima]4.5e-6297.62Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGD LLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLN+QSYSSS TVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

XP_023529517.1 uncharacterized protein LOC111792349 isoform X2 [Cucurbita pepo subsp. pepo]3.7e-64100Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

TrEMBL top hitse value%identityAlignment
A0A6J1EIL3 uncharacterized protein LOC111434473 isoform X11.8e-64100Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

A0A6J1EPK3 uncharacterized protein LOC111434473 isoform X21.7e-6299.21Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAV THWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

A0A6J1GJF7 uncharacterized protein LOC111454842 isoform X34.9e-3873.55Show/hide
Query:  HTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKD----FPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRC
        HTPSSMSPPV DR+ P   SASDLT LNS+SYSSS TVD  +      PSH C QLDAVQTHWT+EKHR +L SLEASFVQ+LH+YR L+ALSSKQKMR 
Subjt:  HTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKD----FPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRC

Query:  RPSMPHISSSEVRQYIHSKSG
        +P MP+ISSSEVRQYIHSKSG
Subjt:  RPSMPHISSSEVRQYIHSKSG

A0A6J1JEE3 uncharacterized protein LOC111486142 isoform X22.1e-6096.83Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGD LLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLN+QSYSSS TVDRFKDFPSHRCLQLDAV THWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

A0A6J1JIM0 uncharacterized protein LOC111486142 isoform X12.2e-6297.62Show/hide
Query:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
        MGD LLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLN+QSYSSS TVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK
Subjt:  MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSK

Query:  QKMRCRPSMPHISSSEVRQYIHSKSG
        QKMRCRPSMPHISSSEVRQYIHSKSG
Subjt:  QKMRCRPSMPHISSSEVRQYIHSKSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCCCCGTCCTCTGCCAGCGACTTGACTTGTTTGAA
CTCCCAATCCTACTCTTCTTCCCTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACA
GATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGTAGGCCGAGCATGCCT
CATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCCTATCTCATTCCTCTACTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCGTTTCTGCACGACCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCTCTCACGATTCCTTTTTCTTTGATTT
CATTCCTTTATTTGCTTTTCTTCCATCTTTGATCCATTCATAATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACA
ACCACCCTCCCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCCTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGC
AACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCT
TTGTCCTCAAAACAGAAAATGCGTTGTAGGCCGAGCATGCCTCATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCCTATCTCAT
TCCTCTACTTCCTTAA
Protein sequenceShow/hide protein sequence
MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMP
HISSSEVRQYIHSKSGSEFPYLIPLLP