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CmoCh11G014010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G014010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGibberellin regulated protein
Genome locationCmo_Chr11:9853936..9855463
RNA-Seq ExpressionCmoCh11G014010
SyntenyCmoCh11G014010
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044354.1 peamaclein-like [Cucumis melo var. makuwa]1.9e-1655.7Show/hide
Query:  LCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        LCFLL ++SF++T  A    C + C+KRCS A +K +CMKYC ICCG CKCVP G YG +H CPCY  + + +GR KCP
Subjt:  LCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

KAE8008067.1 hypothetical protein FH972_004614 [Carpinus fangiana]1.2e-1552.87Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        ++L     LC LLLS+SF+E  MA +  CT  C  RCS A +K +CMKYC ICC +CKCVP G YG +H CPCY      +G+AKCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

KAG6588701.1 Snakin-1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3398.51Show/hide
Query:  METAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP
        METAMAGADVCTRPCRKRCSHAKLKRKCMK+CRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP
Subjt:  METAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP

KAG7022485.1 Snakin-1 [Cucurbita argyrosperma subsp. argyrosperma]3.2e-4598.86Show/hide
Query:  MRGQILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP
        MRGQILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMK+CRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP
Subjt:  MRGQILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP

XP_021683427.1 snakin-1-like [Hevea brasiliensis]1.2e-1554.43Show/hide
Query:  LCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        LC LLLS+SF+E AMA +  CT+ C+ RC+ A +K +C+KYC ICC +CKCVP G YG +H CPCY      +G+ KCP
Subjt:  LCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z1 Uncharacterized protein6.0e-3781.82Show/hide
Query:  MRGQILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP
        MR  +L++G F CFLLLSASFM+TAMA +D CTRPCRKRCS AKLKR+CMKYCRICC KCKCVPG YGKRHCPCYSHVHT+RGRAKCP
Subjt:  MRGQILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP

A0A1S3U496 peamaclein-like1.7e-1549.43Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP
        +I+     L FL+LS+SF+E +MAG+  C   C+ RC+ A+LK++C+KYC ICC KC CVP G YG K  CPCY  +   +G+ KCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP

A0A5D3E0A6 Peamaclein-like9.0e-1755.7Show/hide
Query:  LCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        LCFLL ++SF++T  A    C + C+KRCS A +K +CMKYC ICCG CKCVP G YG +H CPCY  + + +GR KCP
Subjt:  LCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

A0A5N6QLL9 Uncharacterized protein5.8e-1652.87Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        ++L     LC LLLS+SF+E  MA +  CT  C  RCS A +K +CMKYC ICC +CKCVP G YG +H CPCY      +G+AKCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

C6SVU2 Uncharacterized protein1.3e-1549.43Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        ++      L  L+LS+S  E +MAG+  C+  C KRCS A +K +CMK+C ICCGKC CVP G YG +H CPCY  +   +G+AKCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

SwissProt top hitse value%identityAlignment
C0HLQ1 Cypmaclein2.1e-1049.15Show/hide
Query:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCV-PGAYGKR-HCPCYSHVHTLRGRAKCP
        C + C +RCS A    +C+KYC ICC KC CV PG YG    CPCY+++   +G  KCP
Subjt:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCV-PGAYGKR-HCPCYSHVHTLRGRAKCP

O80641 Gibberellin-regulated protein 82.4e-1142.53Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP
        ++++V  F+  LLL++SF   + A +  C   C  RCS A    +C+KYC ICC KC CVP G +G K  CPCY  +   +G +KCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP

P27057 Protein GAST11.7e-0950.85Show/hide
Query:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP
        C   C  RCS    K+ CM +C+ CC KC CVP G YG K+ CPCY++  T RG  KCP
Subjt:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP

P86888 Peamaclein1.2e-1049.21Show/hide
Query:  GADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP
        G+  C   C  RCS A  + +C+KYC ICC KC CVP G YG K  CPCY  +   +G  KCP
Subjt:  GADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP

Q948Z4 Snakin-12.8e-1543.68Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        ++ ++   L  L+++ S ++T MAG+  C   C+ RCS A L  +C+KYC ICC +CKCVP G YG +H CPCY      +G++KCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

Arabidopsis top hitse value%identityAlignment
AT1G74670.1 Gibberellin-regulated family protein2.1e-1049.15Show/hide
Query:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCV-PGAYG-KRHCPCYSHVHTLRGRAKCP
        C   C +RCS+ K  + CM +C+ CC KC CV PG YG K+ CPCY++  T +G  KCP
Subjt:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCV-PGAYG-KRHCPCYSHVHTLRGRAKCP

AT2G14900.1 Gibberellin-regulated family protein1.0e-0936.46Show/hide
Query:  ILIVGCFLCFLLLSASFMETAMAGADV----------CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP
        +L++   L    +S +F   A+A A            C + C  RC  A +K +C+KYC ICC  C+CVP G YG +H C CY    + +G  KCP
Subjt:  ILIVGCFLCFLLLSASFMETAMAGADV----------CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYGKRH-CPCYSHVHTLRGRAKCP

AT2G30810.1 Gibberellin-regulated family protein2.3e-0945.76Show/hide
Query:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP
        C + C  RCS    ++ C+ +C  CC KC CVP G YG K  CPCY++  T  G  KCP
Subjt:  CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP

AT2G39540.1 Gibberellin-regulated family protein1.7e-1242.53Show/hide
Query:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP
        ++++V  F+  LLL++SF   + A +  C   C  RCS A    +C+KYC ICC KC CVP G +G K  CPCY  +   +G +KCP
Subjt:  QILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVP-GAYG-KRHCPCYSHVHTLRGRAKCP

AT3G02885.1 GAST1 protein homolog 51.6e-1042.17Show/hide
Query:  LCFLLLSASFMETAMAGADV----CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCV-PGAYG-KRHCPCYSHVHTLRGRAKCP
        L FLL  ++ ++ A  G  +    C   C  RCS    K+ CM +C  CC KC CV PG +G K+ CPCY++  T  GR KCP
Subjt:  LCFLLLSASFMETAMAGADV----CTRPCRKRCSHAKLKRKCMKYCRICCGKCKCV-PGAYG-KRHCPCYSHVHTLRGRAKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTCAGATCTTGATTGTGGGTTGCTTCTTATGTTTTCTTCTCTTAAGTGCTTCTTTCATGGAAACCGCCATGGCCGGCGCAGACGTGTGCACGAGACCGTGCAG
GAAGAGGTGCTCGCACGCGAAGCTGAAGCGTAAGTGCATGAAGTATTGCAGAATATGTTGCGGTAAATGCAAGTGTGTGCCGGGGGCTTATGGGAAGCGCCACTGCCCTT
GCTATAGCCATGTGCACACCCTTAGGGGCAGGGCCAAGTGCCCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTAATTTTAAATTTTAATTTTAAATTTTAATTTTAAAAGTAGGGTCAGGTACGATTAGATTGTAACACTAATTTTAAATGGATCCACGCTTACCGTTCTTGTTTAAAAA
CACGGAGTGGGAGAATTGAGTGTAGTGTCTGAGGATTGGTTTGTGGTGGTGTTGAAAGGAAGAAGATGAGAGGTCAGATCTTGATTGTGGGTTGCTTCTTATGTTTTCTT
CTCTTAAGTGCTTCTTTCATGGAAACCGCCATGGCCGGCGCAGACGTGTGCACGAGACCGTGCAGGAAGAGGTGCTCGCACGCGAAGCTGAAGCGTAAGTGCATGAAGTA
TTGCAGAATATGTTGCGGTAAATGCAAGTGTGTGCCGGGGGCTTATGGGAAGCGCCACTGCCCTTGCTATAGCCATGTGCACACCCTTAGGGGCAGGGCCAAGTGCCCTT
GATTTTAAGGCCACTGTGGCATTGTCCCCTTAAAACCAACCTTCCAAGAGACCAAATAATTTTGTGTTTGAATTTGAGTATTAAAGGTTGAAAGTTTGTGAGTGAAGTTT
GGTTGGTTTGATAAACAATGTGTATTTATGGTATGTAACTAAGAAATGTAATGCTGTTTGGGCTTTTATTCAATAAGAATCATAAGAACGTTATTTTTTTTTCGGTC
Protein sequenceShow/hide protein sequence
MRGQILIVGCFLCFLLLSASFMETAMAGADVCTRPCRKRCSHAKLKRKCMKYCRICCGKCKCVPGAYGKRHCPCYSHVHTLRGRAKCP