CuGenDBv2

Gene ID	CmoCh11G014030
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	classical arabinogalactan protein 9
Genome location	Cmo_Chr11:9876323..9876763
RNA-Seq Expression	CmoCh11G014030
Synteny	CmoCh11G014030
Gene Ontology terms	GO:0005886 - plasma membrane (cellular component)
InterPro domains	IPR003882 - Pistil-specific extensin-like protein IPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7022486.1 hypothetical protein SDJN02_16217, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-49

93.79

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPT-----SPPPASPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPT-----SPPPASPPPATPPPAPLASPPAAV

Query:  PAPAPSKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  PAPAPSKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

XP_022927816.1 classical arabinogalactan protein 9 isoform X1 [Cucurbita moschata]

3.1e-53

100

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

XP_022927817.1 classical arabinogalactan protein 9 isoform X2 [Cucurbita moschata]

2.6e-47

92.86

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS          SPPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

XP_022927818.1 classical arabinogalactan protein 9 isoform X3 [Cucurbita moschata]

3.1e-53

100

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

XP_022988984.1 classical arabinogalactan protein 9 isoform X1 [Cucurbita maxima]

2.9e-43

87.86

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPATPPPVS PPP SPPPA+PPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAAS+PSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EI95 classical arabinogalactan protein 9 isoform X2

1.2e-47

92.86

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS          SPPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

A0A6J1EIM1 classical arabinogalactan protein 9 isoform X1

1.5e-53

100

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

A0A6J1EM34 classical arabinogalactan protein 9 isoform X3

1.5e-53

100

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

A0A6J1JL42 classical arabinogalactan protein 9 isoform X2

1.4e-43

87.86

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPATPPPVS PPP SPPPA+PPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAAS+PSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

A0A6J1JN37 classical arabinogalactan protein 9 isoform X1

1.4e-43

87.86

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Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP
        MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPATPPPVS PPP SPPPA+PPPATPPPAPLASPPAAVPAPAP
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAP

Query:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
        SKKKSKAAS+PSPLSSPPAPSAEAPVPTSSDSPTPSQNDN
Subjt:  SKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN

SwissProt top hits

e value

%identity

Alignment

Q9C5S0 Classical arabinogalactan protein 9

6.0e-15

57.23

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Query:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVS-----APPPATPPPVSSPPP--TSPPPASPPP-A
        ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP + PPPVS     +PPPATPPPV+SPPP   SPPPA+PPP A
Subjt:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVS-----APPPATPPPVSSPPP--TSPPPASPPP-A

Query:  TPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND
        TPPPAPLASPPA VPAPAP+ K    + +PSP SSPP PS++AP P T S SP PS  D
Subjt:  TPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND

Arabidopsis top hits

e value

%identity

Alignment

AT2G14890.1 arabinogalactan protein 9

4.3e-16

57.23

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Query:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVS-----APPPATPPPVSSPPP--TSPPPASPPP-A
        ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP + PPPVS     +PPPATPPPV+SPPP   SPPPA+PPP A
Subjt:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVS-----APPPATPPPVSSPPP--TSPPPASPPP-A

Query:  TPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND
        TPPPAPLASPPA VPAPAP+ K    + +PSP SSPP PS++AP P T S SP PS  D
Subjt:  TPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND

AT2G14890.2 arabinogalactan protein 9

4.3e-16

57.23

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Query:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVS-----APPPATPPPVSSPPP--TSPPPASPPP-A
        ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP + PPPVS     +PPPATPPPV+SPPP   SPPPA+PPP A
Subjt:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVS-----APPPATPPPVSSPPP--TSPPPASPPP-A

Query:  TPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND
        TPPPAPLASPPA VPAPAP+ K    + +PSP SSPP PS++AP P T S SP PS  D
Subjt:  TPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND

Sequences

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CDS sequence

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ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTC
AGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCGGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTGTCATCTCCTCCTCCGACATCTCCTC
CTCCGGCATCTCCTCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTCCCGGCCCCTGCACCCAGTAAGAAGAAGTCAAAGGCAGCTTCAGCA
CCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCCACCCCGTCTCAAAACGACAATGTAAGTTTTAAAAAATTATA
A

mRNA sequence

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Protein sequence

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MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSSPPPTSPPPASPPPATPPPAPLASPPAAVPAPAPSKKKSKAASA
PSPLSSPPAPSAEAPVPTSSDSPTPSQNDNVSFKKL

CmoCh11G014030 (gene) of Cucurbita moschata (Rifu) v1 genome