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CmoCh11G014110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G014110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGlutamate racemase
Genome locationCmo_Chr11:9907596..9909656
RNA-Seq ExpressionCmoCh11G014110
SyntenyCmoCh11G014110
Gene Ontology termsNA
InterPro domainsIPR004926 - Late embryogenesis abundant protein, LEA_3 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588707.1 hypothetical protein SDJN03_17272, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5799.11Show/hide
Query:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG
        MARTSVQANALLFR VKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG
Subjt:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG

Query:  PRLAAVLGAGQD
        PRLAAVLGAGQD
Subjt:  PRLAAVLGAGQD

KAG7022491.1 hypothetical protein SDJN02_16223, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-5097.98Show/hide
Query:  RNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD
        + VKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD
Subjt:  RNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD

XP_022927901.1 uncharacterized protein LOC111434665 [Cucurbita moschata]6.6e-87100Show/hide
Query:  MSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIY
        MSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIY
Subjt:  MSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIY

Query:  FPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD
        FPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD
Subjt:  FPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD

XP_022989019.1 uncharacterized protein LOC111486209 [Cucurbita maxima]3.6e-5697.32Show/hide
Query:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG
        MARTSVQANALLFR VKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPD HPSPG
Subjt:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG

Query:  PRLAAVLGAGQD
        PRLAAVLGA QD
Subjt:  PRLAAVLGAGQD

XP_023531513.1 uncharacterized protein LOC111793725 [Cucurbita pepo subsp. pepo]1.6e-5697.32Show/hide
Query:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG
        MARTSVQANALLFR VKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPD HPSPG
Subjt:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG

Query:  PRLAAVLGAGQD
        PRLAAVLG GQD
Subjt:  PRLAAVLGAGQD

TrEMBL top hitse value%identityAlignment
A0A0A0K7S0 Uncharacterized protein1.4e-2664Show/hide
Query:  VQANALLFRNVKQLRRQFSSLANSSHNK-------EETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPS
        +QAN L  R +KQL+ QF  L   S ++       +ETETE L YNSSTWVPHPRTGIYFPQGHEWVMKD+PENAASF  + WFRD D VDDLNPD   S
Subjt:  VQANALLFRNVKQLRRQFSSLANSSHNK-------EETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPS

A0A1S3C0N8 uncharacterized protein LOC1034952983.7e-2762.62Show/hide
Query:  MARTSV--QANALLFRNVKQLRRQFSSLANSSHNK-------EETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDL
        M+RT +  QAN L  R +KQL+RQF SL   S ++       +ETET+ L YNSSTWVPHPRTGIYFPQGHEWVMKD+PENAASFS + WFRD D VDDL
Subjt:  MARTSV--QANALLFRNVKQLRRQFSSLANSSHNK-------EETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDL

Query:  NPDAHPS
        N + + S
Subjt:  NPDAHPS

A0A6J1D3R9 uncharacterized protein LOC1110173323.4e-3672.81Show/hide
Query:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEET------ETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPD
        MAR +V+ANA+L R +KQLRRQFSS A  S  KEE       ETEP  YNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFS V WFRD DGVDD NPD
Subjt:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEET------ETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPD

Query:  AHPSPGPRLAAVLG
         +PS GPR AA  G
Subjt:  AHPSPGPRLAAVLG

A0A6J1EIT6 uncharacterized protein LOC1114346653.2e-87100Show/hide
Query:  MSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIY
        MSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIY
Subjt:  MSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIY

Query:  FPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD
        FPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD
Subjt:  FPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD

A0A6J1JN70 uncharacterized protein LOC1114862091.7e-5697.32Show/hide
Query:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG
        MARTSVQANALLFR VKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPD HPSPG
Subjt:  MARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPG

Query:  PRLAAVLGAGQD
        PRLAAVLGA QD
Subjt:  PRLAAVLGAGQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73120.1 unknown protein2.0e-0465.38Show/hide
Query:  SSTWVPHPRTGIYFPQGHEWVMKDVP
        +S+WVPH  TGIY+P+G E VM+DVP
Subjt:  SSTWVPHPRTGIYFPQGHEWVMKDVP

AT3G19550.1 unknown protein4.2e-1544.95Show/hide
Query:  MARTSV-QANALLFRNVKQL--RRQFSSLANSSHNK-----EETETEPLSYN--SSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDD
        M RT + +A  LL R+ KQ   R   SS A  S+       E+     L ++    +WVPHPRTGI+FP G E VM+DVP  AASF   FW R+ DGVD 
Subjt:  MARTSV-QANALLFRNVKQL--RRQFSSLANSSHNK-----EETETEPLSYN--SSTWVPHPRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDD

Query:  LNPDAHPSP
         +PD H  P
Subjt:  LNPDAHPSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAATCCCTGGACGGAAGAGGACTACGATGGCCAAGTACTTACATGTCCTTCTACAACCACTTCTCCAAAAGCCCTATAAATTGGGATTTTCCCGGAAAATTACT
TCTCACAACCTGTTTGCCTCATTTTCCCGGAAAATTTCTTCTTCCAAACCTGCTTGCCTCAGATTGTATGGCAAGGACTTCTGTGCAGGCCAATGCATTGCTTTTTAGGA
ATGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAACAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCAT
CCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGT
CGACGACCTAAACCCCGACGCTCATCCCTCTCCCGGACCTCGACTTGCTGCTGTTTTAGGTGCCGGGCAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAATCCCTGGACGGAAGAGGACTACGATGGCCAAGTACTTACATGTCCTTCTACAACCACTTCTCCAAAAGCCCTATAAATTGGGATTTTCCCGGAAAATTACT
TCTCACAACCTGTTTGCCTCATTTTCCCGGAAAATTTCTTCTTCCAAACCTGCTTGCCTCAGATTGTATGGCAAGGACTTCTGTGCAGGCCAATGCATTGCTTTTTAGGA
ATGTGAAGCAATTGAGGCGCCAATTCAGCAGCCTTGCAAATAGCTCACATAACAAAGAGGAGACAGAAACAGAGCCATTGTCCTATAACTCATCAACGTGGGTGCCCCAT
CCCCGGACTGGAATATACTTCCCTCAGGGCCATGAGTGGGTCATGAAGGATGTCCCTGAAAATGCAGCTTCCTTCTCTCCCGTTTTCTGGTTCCGGGATTTCGATGGCGT
CGACGACCTAAACCCCGACGCTCATCCCTCTCCCGGACCTCGACTTGCTGCTGTTTTAGGTGCCGGGCAGGATTGATCTTGGGGGAAGATGGCTATCAACTTCAGAGTTA
GCATAGGAGTTTAAAGTTGGAGTATGGATGGCCAATGACCAAATTGGCCTAGGAATAATGTAAAGTATGATGGTGTAATGATCACTTGCATCTGGGAAGATGGTAAATAT
TGCATAATAAAGTGAATAAATTTTATTAAATTTATCGTAATGTATCAACTTAAATGTGATACCCGAATAACATAGAGGTACGTAAATGAACCAGAA
Protein sequenceShow/hide protein sequence
MLKSLDGRGLRWPSTYMSFYNHFSKSPINWDFPGKLLLTTCLPHFPGKFLLPNLLASDCMARTSVQANALLFRNVKQLRRQFSSLANSSHNKEETETEPLSYNSSTWVPH
PRTGIYFPQGHEWVMKDVPENAASFSPVFWFRDFDGVDDLNPDAHPSPGPRLAAVLGAGQD