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CmoCh11G014260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G014260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem I reaction centre subunit N
Genome locationCmo_Chr11:10047861..10048707
RNA-Seq ExpressionCmoCh11G014260
SyntenyCmoCh11G014260
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009522 - photosystem I (cellular component)
InterPro domainsIPR008796 - Photosystem I reaction centre subunit N, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588719.1 hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4995.12Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTAT    TSASSDIQRRGL+LSAAVAAAVDSRT+LLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEK
        YKDYFEFVEGSLKNKDELSEAEK
Subjt:  YKDYFEFVEGSLKNKDELSEAEK

KAG7022506.1 hypothetical protein SDJN02_16238, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-5999.25Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGL+LSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

XP_022927848.1 uncharacterized protein LOC111434615 [Cucurbita moschata]2.7e-59100Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

XP_022989008.1 uncharacterized protein LOC111486201 [Cucurbita maxima]6.8e-5595.49Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT     A+TSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

XP_023531124.1 uncharacterized protein LOC111793462 [Cucurbita pepo subsp. pepo]1.3e-5899.25Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAST ASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

TrEMBL top hitse value%identityAlignment
A0A1S3C176 uncharacterized protein LOC1034953194.6e-4175.71Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLS-------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERL
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK            A+ + SS I RR LLLS       AA AAAVDSRTELLKRYLKKSEENKEKNDKERL
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLS-------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERL

Query:  ESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        ES+YKRNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKRNK
Subjt:  ESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

A0A2I4HLI8 uncharacterized protein LOC1090192137.6e-3669.85Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAA--AVDSRTELLKRYLKKSEENKEKNDKERLESFYK
        MSSIGQ+ILMAL +T+N+FASSNVQ+V R + KTP +TT TT      +SDI RR LLLS  VAA    DSRT+LLK+YLKKSEENK KNDKERL+S+YK
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAA--AVDSRTELLKRYLKKSEENKEKNDKERLESFYK

Query:  RNYKDYFEFVEGSLK-NKDELSEAEKGIIEWLKRNK
        RNYKDYFEFVEG+ K N+++LSEAEKGII+WL+RNK
Subjt:  RNYKDYFEFVEGSLK-NKDELSEAEKGIIEWLKRNK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X11.4e-3771.11Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAA--VDSRTELLKRYLKKSEENKEKNDKERLESFYK
        MSSIGQ+ILMALA+T+N+FASSNVQSV RN+            ++ +A+SDI RRGLL SA  AA   VDSRTELLKRYLKKSE+NKEKNDKERL+S+YK
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAA--VDSRTELLKRYLKKSEENKEKNDKERLESFYK

Query:  RNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        RNYKDYFEFVEGS++NK ELSE EK IIEWL+RNK
Subjt:  RNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

A0A6J1EM63 uncharacterized protein LOC1114346151.3e-59100Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

A0A6J1JNZ7 uncharacterized protein LOC1114862013.3e-5595.49Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
        MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT     A+TSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRN

Query:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
        YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK
Subjt:  YKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.1e-3159.12Show/hide
Query:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAA--VAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYK
        MSSI Q+ILMAL +T+N++ASSNVQ+V+RN  K          + T+  +D+ RR +L S+   +AAA+ S  +LL++YLKK+EENK KNDKERL+SFYK
Subjt:  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAA--VAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYK

Query:  RNYKDYFEFVEGSLKNKD--ELSEAEKGIIEWLKRNK
        RNYKDYFEFVEGS+K K   ELSE+EK I+EWLK NK
Subjt:  RNYKDYFEFVEGSLKNKD--ELSEAEKGIIEWLKRNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCAATTCGCTTCCTCAAACGTCCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCAC
CACCACCGCCACCACCTCCGCCTCCACCTCCGCCAGTTCTGACATCCAACGCAGAGGCCTCCTCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCC
TAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGA
TCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAGTGGCTTAAGAGAAACAAATAA
mRNA sequenceShow/hide mRNA sequence
AAGAAAGCCTCATCTGTTCATCAACCTCATCCACAACCCCAACACTCTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTCAACCA
ATTCGCTTCCTCAAACGTCCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTCCGCCAGTTCTGACATCCAACGCA
GAGGCCTCCTCTTATCTGCCGCCGTGGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTAAAGAAATCTGAAGAAAACAAAGAAAAGAACGACAAGGAG
AGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAGTG
GCTTAAGAGAAACAAATAAATGAATTTCTTCTATCAATTATCAATTATCATTTCAACGATCGATCTCAATCAATTTATCACTTTCACAATTAAAAGGAAAGTTGCCATAT
TTACAAATATTCAAATTTTGCTATCTATTAAAATTATTCGTGATATTATTCGATTTGAGCCTAGGGTTCATCAAGAACGCTTTTGTACCAATGAAGTTCCTGTCCTAATT
TATACACGTAGATTTTTTAA
Protein sequenceShow/hide protein sequence
MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEG
SLKNKDELSEAEKGIIEWLKRNK