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CmoCh11G015760 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G015760
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At3g26782, mitochondrial
Genome locationCmo_Chr11:11327199..11327888
RNA-Seq ExpressionCmoCh11G015760
SyntenyCmoCh11G015760
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581130.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0788.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL LSPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

KAG7017863.1 Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0788.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL LSPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

XP_022934638.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Cucurbita moschata]1.1e-0788.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL LSPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

XP_022983582.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Cucurbita maxima]1.1e-0788.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL LSPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

XP_023527073.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Cucurbita pepo subsp. pepo]2.5e-0785.71Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL +SPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

TrEMBL top hitse value%identityAlignment
A0A6J1D374 pentatricopeptide repeat-containing protein At3g26782, mitochondrial2.7e-0782.86Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKLALSP+ S+FPCAIKSCSALCDLV+G+Q HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

A0A6J1F879 pentatricopeptide repeat-containing protein At3g26782, mitochondrial5.5e-0888.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL LSPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

A0A6J1IZS5 pentatricopeptide repeat-containing protein At3g26782, mitochondrial5.5e-0888.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL LSPT STFPCAIKSCSALCDLVSGR +HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

A0A6P6V3V8 pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like1.6e-0781.08Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQGL
        MRKL+L P  STFPCAIKSCSALCDL SG+QAHQQ L
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQGL

A0A6P6V935 pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like4.6e-0778.38Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQGL
        +RKL+L P  STFPCAIKSCSALCDL SG+QAHQQ L
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQGL

SwissProt top hitse value%identityAlignment
Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial7.6e-0768.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL+L PT S+FPCAIK+CS+L D+ SG+Q HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ

Arabidopsis top hitse value%identityAlignment
AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.4e-0868.57Show/hide
Query:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ
        MRKL+L PT S+FPCAIK+CS+L D+ SG+Q HQQ
Subjt:  MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAAGCTTGCCCTCAGTCCTACTCTCTCCACATTCCCCTGCGCCATCAAGTCCTGTTCGGCTCTGTGCGATCTCGTCTCCGGCAGGCAGGCTCACCAGCAAGGTTT
GTCTTCGGCTTTGAGACTGATCTTTTTGTGTCATCTGCTCTATCGGTATGTACTCGAAATGTGGCGAGTTGAAGGATGCACGAGAACTGTTCGACGAAATTCCCCTTCGA
AATCTGGTCTCTTGGACGTCAATGATTACTAG
mRNA sequenceShow/hide mRNA sequence
AGCGCCTTCTTCGCCATGCGAAAGCTTGCCCTCAGTCCTACTCTCTCCACATTCCCCTGCGCCATCAAGTCCTGTTCGGCTCTGTGCGATCTCGTCTCCGGCAGGCAGGC
TCACCAGCAAGGTTTGTCTTCGGCTTTGAGACTGATCTTTTTGTGTCATCTGCTCTATCGGTATGTACTCGAAATGTGGCGAGTTGAAGGATGCACGAGAACTGTTCGAC
GAAATTCCCCTTCGAAATCTGGTCTCTTGGACGTCAATGATTACTAGATTGAAGATGGCAACAATGTTCCTCTCGACTCAGTCGTCATGGTTTCAGTTTTATCCGCTTGT
TTTCAAGTGTCGGGTAAGGGGATCACGGATGGAATCCATGGCTTTGTGGTAAAGAAAGGCTTTGATGGGAGCGTTGGAGTTGGAAACACATTGATGGATGTGTATGCAAA
ATGTGGGCATCCTTTGGTTTCTAGGAAGGTGTTTGATTGTGAGGTCCCA
Protein sequenceShow/hide protein sequence
MRKLALSPTLSTFPCAIKSCSALCDLVSGRQAHQQGLSSALRLIFLCHLLYRYVLEMWRVEGCTRTVRRNSPSKSGLLDVNDY