; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G015840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G015840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionC2H2-like zinc finger protein
Genome locationCmo_Chr11:11378468..11378932
RNA-Seq ExpressionCmoCh11G015840
SyntenyCmoCh11G015840
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588875.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia]2.7e-7996.25Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHWFHQNNHYRGTTTT------ASASPNDLSPNADAAVEHVTIDLTLRL
        TTALAPSALFDEHWFHQNNHYRGTTTT      ASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  TTALAPSALFDEHWFHQNNHYRGTTTT------ASASPNDLSPNADAAVEHVTIDLTLRL

KAG7022634.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-7895.65Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSR-PPPPPPTTYHHLASP
        MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSR PPPPPPTTYHHLASP
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSR-PPPPPPTTYHHLASP

Query:  STTALAPSALFDEHWFHQNNHYRGTTTT------ASASPNDLSPNADAAVEHVTIDLTLRL
        STTALAPSALFDEHWFHQNNHYRGTTTT      ASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  STTALAPSALFDEHWFHQNNHYRGTTTT------ASASPNDLSPNADAAVEHVTIDLTLRL

XP_022928226.1 protein LATE FLOWERING-like [Cucurbita moschata]2.9e-81100Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL
        TTALAPSALFDEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  TTALAPSALFDEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL

XP_022989523.1 protein LATE FLOWERING-like [Cucurbita maxima]1.0e-7897.44Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK FTSEILHLGSLQHSRPPPPPPTTYHHLASPS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHWFHQNNHYRGTTTT--ASASPNDLSPNADAAVEHVTIDLTLRL
         TALAPSALFDEHWFHQNNHYRGTTTT  ASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  TTALAPSALFDEHWFHQNNHYRGTTTT--ASASPNDLSPNADAAVEHVTIDLTLRL

XP_023530190.1 zinc finger protein 7-like [Cucurbita pepo subsp. pepo]7.6e-7491.36Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQT ASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSL HSR PPPPPTTYHHLASPS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHWFHQNNHYRGTTTT--------ASASPNDLSPNADAAVEHVTIDLTLRL
         TA APS LFDEHWFHQNNHYRGTTTT        ASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  TTALAPSALFDEHWFHQNNHYRGTTTT--------ASASPNDLSPNADAAVEHVTIDLTLRL

TrEMBL top hitse value%identityAlignment
A0A6J1DQT0 zinc finger protein 65.0e-3963.87Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S++LH         PPPPP        PS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHW-FHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL
         +    ++  DEHW     NH+R   ++AS   + LSPNAD AVE+VTIDLTLRL
Subjt:  TTALAPSALFDEHW-FHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL

A0A6J1EJQ6 protein LATE FLOWERING-like1.4e-81100Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL
        TTALAPSALFDEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  TTALAPSALFDEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL

A0A6J1F843 protein LATE FLOWERING-like3.0e-5272.35Show/hide
Query:  MADPAIYDFLSQ-TTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPP---TTYHHL
        MADPAIYDFL+Q TTASNS PK  SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL    PPPPPP   TT+HHL
Subjt:  MADPAIYDFLSQ-TTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPP---TTYHHL

Query:  ASPSTTA--------LAPSALFDEHWFHQNNHYRGTTTT----ASASPNDLSPNADAAVEHVTIDLTLRL
          P T A         AP+    +HWF+QN++   TTTT    ASASP+ LSPNAD AVEHVTIDLTLRL
Subjt:  ASPSTTA--------LAPSALFDEHWFHQNNHYRGTTTT----ASASPNDLSPNADAAVEHVTIDLTLRL

A0A6J1J5R2 protein LATE FLOWERING-like1.8e-4971.26Show/hide
Query:  MADPAIYDFLSQ-TTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPT--TYHHLA
        MADPAIYDFL+Q TTASNS PK  SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL    PP P  T  T+HHL 
Subjt:  MADPAIYDFLSQ-TTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPT--TYHHLA

Query:  SPSTTALAPSA------LFDEHWFHQNNHYRGTTTT----ASASPNDLSPNADAAVEHVTIDLTLRL
         P T A AP+          +HWF+QN++   TTTT    ASASP+ LSPN D AVEHVTIDLTLRL
Subjt:  SPSTTALAPSA------LFDEHWFHQNNHYRGTTTT----ASASPNDLSPNADAAVEHVTIDLTLRL

A0A6J1JQI7 protein LATE FLOWERING-like4.9e-7997.44Show/hide
Query:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS
        MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK FTSEILHLGSLQHSRPPPPPPTTYHHLASPS
Subjt:  MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPS

Query:  TTALAPSALFDEHWFHQNNHYRGTTTT--ASASPNDLSPNADAAVEHVTIDLTLRL
         TALAPSALFDEHWFHQNNHYRGTTTT  ASASPNDLSPNADAAVEHVTIDLTLRL
Subjt:  TTALAPSALFDEHWFHQNNHYRGTTTT--ASASPNDLSPNADAAVEHVTIDLTLRL

SwissProt top hitse value%identityAlignment
Q39263 Zinc finger protein 41.5e-0852.46Show/hide
Query:  LSQTTASNSVPKTTSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        L+   +S S      ++ Q Q S S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  LSQTTASNSVPKTTSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Q39266 Zinc finger protein 73.0e-0951.61Show/hide
Query:  KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSL--QHSRP
        KS    ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++A     +H+G +   H RP
Subjt:  KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSL--QHSRP

Q42485 Zinc finger protein 11.5e-0863.41Show/hide
Query:  QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

Q9FFX4 Zinc finger protein KNUCKLES2.3e-1257.14Show/hide
Query:  SNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRP
        + S  K  S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+       +LG L +S P
Subjt:  SNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRP

Q9FKA9 Protein LATE FLOWERING1.9e-1143.48Show/hide
Query:  PKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALF
        P   + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++     H+ P      + HHL      A A  A F
Subjt:  PKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALF

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 72.2e-1051.61Show/hide
Query:  KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSL--QHSRP
        KS    ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++A     +H+G +   H RP
Subjt:  KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSL--QHSRP

AT1G66140.1 zinc finger protein 41.1e-0952.46Show/hide
Query:  LSQTTASNSVPKTTSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        L+   +S S      ++ Q Q S S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  LSQTTASNSVPKTTSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

AT1G80730.1 zinc-finger protein 11.1e-0963.41Show/hide
Query:  QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein1.6e-1357.14Show/hide
Query:  SNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRP
        + S  K  S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+       +LG L +S P
Subjt:  SNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRP

AT5G48890.1 C2H2-like zinc finger protein1.4e-1243.48Show/hide
Query:  PKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALF
        P   + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++     H+ P      + HHL      A A  A F
Subjt:  PKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCCTGCCATTTACGACTTCCTTAGCCAAACGACTGCTTCAAATTCTGTACCGAAAACGACCTCCAGAAAATCTCAGTCTCAATACTCTTCCTCACGCATTTT
TCCATGCCTTTACTGTCCTCGAAAATTCTACACTTCCCAAGCCCTAGGCGGCCACCAAAATGCTCACAAAAGAGAACGAGCAGCTTCGCGTAAGGCCTTCACCTCTGAAA
TTCTTCACCTCGGTTCGCTTCAACACTCGAGGCCACCGCCGCCGCCGCCGACTACTTACCACCATCTTGCATCGCCGTCTACTACAGCACTGGCTCCGTCGGCGCTTTTT
GACGAGCATTGGTTCCACCAGAATAATCACTACCGAGGTACTACCACTACAGCCTCCGCCTCGCCGAACGATCTCTCACCGAATGCTGATGCTGCCGTCGAACACGTAAC
CATCGATCTCACTCTTCGCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACCCTGCCATTTACGACTTCCTTAGCCAAACGACTGCTTCAAATTCTGTACCGAAAACGACCTCCAGAAAATCTCAGTCTCAATACTCTTCCTCACGCATTTT
TCCATGCCTTTACTGTCCTCGAAAATTCTACACTTCCCAAGCCCTAGGCGGCCACCAAAATGCTCACAAAAGAGAACGAGCAGCTTCGCGTAAGGCCTTCACCTCTGAAA
TTCTTCACCTCGGTTCGCTTCAACACTCGAGGCCACCGCCGCCGCCGCCGACTACTTACCACCATCTTGCATCGCCGTCTACTACAGCACTGGCTCCGTCGGCGCTTTTT
GACGAGCATTGGTTCCACCAGAATAATCACTACCGAGGTACTACCACTACAGCCTCCGCCTCGCCGAACGATCTCTCACCGAATGCTGATGCTGCCGTCGAACACGTAAC
CATCGATCTCACTCTTCGCTTATGA
Protein sequenceShow/hide protein sequence
MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALF
DEHWFHQNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL