CuGenDBv2

Gene ID	CmoCh11G016440
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	C2H2-type domain-containing protein
Genome location	Cmo_Chr11:11680047..11685837
RNA-Seq Expression	CmoCh11G016440
Synteny	CmoCh11G016440
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR013087 - Zinc finger C2H2-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6588922.1 hypothetical protein SDJN03_17487, partial [Cucurbita argyrosperma subsp. sororia]

8.8e-161

99.65

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Query:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
        MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQ SKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
Subjt:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND

Query:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
        MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
Subjt:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG

Query:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
Subjt:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

KAG7022689.1 hypothetical protein SDJN02_16423, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.5e-157

97.54

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Query:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
        +TSTMGRRSIWVALLVISLLFSLRPQRVSST PLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
Subjt:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND

Query:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
        MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGAL CDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
Subjt:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG

Query:  V-ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
          ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLT+LIV+FFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
Subjt:  V-ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

XP_022928324.1 uncharacterized protein LOC111435184 [Cucurbita moschata]

1.4e-161

100

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Query:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
        MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
Subjt:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND

Query:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
        MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
Subjt:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG

Query:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
Subjt:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

XP_023532028.1 uncharacterized protein LOC111794116 [Cucurbita pepo subsp. pepo]

1.0e-156

98.57

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD
        MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD

Query:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGV-AS
        QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAA ARNKHMCEALADSCFPIN+G  AS
Subjt:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGV-AS

Query:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
Subjt:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

XP_038891552.1 uncharacterized protein LOC120080934 [Benincasa hispida]

6.8e-137

85.36

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD
        MGRRS+WVALLV  LL SLRP  VSS LPLQ+LNQG KDSA+ES PKQDWN+A EVHCSRERSRAAWKIIEEYLMPFV+KKK+KIS++CRLHPDNDMFRD
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD

Query:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGV-AS
        QEQHK+HLDFNDWKCGYCRKRFYEEKYLDQHFDNRHY+LLNVSR++C+ADLCGALHCDHV+D+VSQ KSKCNPAA ARNKHMCE LADSCFP+++G  AS
Subjt:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGV-AS

Query:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        HLHEFFLRQFCDAHTCSGKPKPFSRGRQVR +  Y+VISVLT+L VLFFYVF+YLYKRGMRTRPQVLKRLS+SGRKKKPS
Subjt:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8D2 C2H2-type domain-containing protein

8.1e-136

85.46

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQG--SKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMF
        MGRRSI VALL+ SLL SLRP  VSSTLPLQSLNQG  SKDSA+ES PKQDWN+A EVHCSRERSRAAWK+IEEYLMPFV+KKK+KIST+CRLHPDNDMF
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQG--SKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMF

Query:  RDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-V
        RDQEQHK+HLDFNDWKCGYCRKRFYEEKY+DQHFDNRHY+LLNVSRN+C+ADLCGALHCDHV+D+VSQ KSKCNPAA ARNKHMCE LADSCFP+++G +
Subjt:  RDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-V

Query:  ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        ASHLHEFFL QFCDAHTCSGKPKPFSRGRQVR S  Y+VISVLTIL V+FFYVF YLY RGMRTRPQVLKRLS+SGRKKKPS
Subjt:  ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

A0A1S3BMS8 uncharacterized protein LOC103491758

6.9e-135

85.71

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD
        MGRRSI VALLV SLL SLRP  VSSTLPLQSLNQGS +SA+ S PKQDWN+A EVHCSRERSRAAWK+IEEYLMPFV+KKK++IST+CRLHPDNDMFRD
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD

Query:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-VAS
        QEQHK+HLDFNDWKCGYCRKRFYEEKY+DQHFDNRHY+LLNVSRN+C+ADLCGALHCDHV+D+VSQ KSKCNPAA ARNKHMCE LADSCFP+++G +AS
Subjt:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-VAS

Query:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTS  Y+VISVLTIL V+FFYVF YLY RGMRTRPQVLKRLS+SGRKKKPS
Subjt:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

A0A5A7URM7 Zinc finger family protein

6.2e-136

85.82

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQG--SKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMF
        MGRRSI VALLV SLL SLRP  VSSTLPLQSLNQG  SKDSA+ S PKQDWN+A EVHCSRERSRAAWK+IEEYLMPFV+KKK++IST+CRLHPDNDMF
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQG--SKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMF

Query:  RDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-V
        RDQEQHK+HLDFNDWKCGYCRKRFYEEKY+DQHFDNRHY+LLNVSRN+C+ADLCGALHCDHV+D+VSQ KSKCNPAA ARNKHMCE LADSCFP+++G +
Subjt:  RDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-V

Query:  ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTS  Y+VISVLTIL V+FFYVF YLY RGMRTRPQVLKRLS+SGRKKKPS
Subjt:  ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

A0A6J1EKH9 uncharacterized protein LOC111435184

6.6e-162

100

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Query:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
        MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND
Subjt:  MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDND

Query:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
        MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG
Subjt:  MFRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG

Query:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
Subjt:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

A0A6J1J0Y1 uncharacterized protein LOC111482459

1.8e-135

85.71

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD
        MGRRS+WVALLV+SLL   RP  VSSTLPLQSLNQGSKDSATES PKQD N+A EVHCSRERSRAAWKIIEEYLMPFVDKK++KIST+CRLHPDNDMFRD
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRD

Query:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGV-AS
        QEQHK+HLDFNDWKCGYC+K+FYEEKYLDQHF NRHYDLLNVSR+KC+AD CGALHCD V+DS+SQ KSKCNPAA ARNKHMCE LADSCFPI+ G  AS
Subjt:  QEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGV-AS

Query:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTS  Y+VISVLT++ VLFFYVF+YLYKRGMRTRPQVLKRLS+SG KKKPS
Subjt:  HLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G40710.1 zinc finger (C2H2 type) family protein

7.4e-81

51.77

Show/hide

Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQ---GSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDM
        MGR +       I L F +  Q    +LP   + Q   G KD      P+  ++   E+HCSRERSR AWKII+EYLMP+V+K+++++ + CR+H DND+
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQ---GSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDM

Query:  FRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-
        +R+QE+HK   D N+W+CG+C+K FYEEKYLD+HFD+RHY+LLN S  KC++DLCGALHCD V+D+ ++ KSKCNPAA A+N+H+CE+LA+SCFP+N+G 
Subjt:  FRDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-

Query:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKP
         A+ LH+FFLRQFCDAHTCSG  KP S+ +  + S  Y++ S++ ++++L +Y FVYL++RG++ R Q LKR+  +G KKKP
Subjt:  VASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKP

AT5G63280.1 C2H2-like zinc finger protein

5.6e-81

52.48

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Query:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQ--DWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMF
        MGR  +W +L VI LL  L        L  QS++QG ++S +     +  + ++A E+HCSRERSRAAW+II++YL PFV++++++I   CRLHPDND++
Subjt:  MGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQ--DWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMF

Query:  RDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-V
        RDQE HK H+D  +WKCGYC+K F +EK+LD+HF  RHY+LLN +  KC+ADLCGALHCD V+ S  + KSKCNP A A+N+H+CE++A+SCFP++QG  
Subjt:  RDQEQHKTHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQG-V

Query:  ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS
        AS LHE FLRQFCDAHTC+G  KPF RG + ++   Y+ IS+LT++++  FY+ V+L++R  R+  Q L+R+ +SG+K KPS
Subjt:  ASHLHEFFLRQFCDAHTCSGKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACATCGACGATGGGAAGGCGATCCATATGGGTTGCTCTTCTCGTCATCTCTCTTCTTTTTTCGTTGCGACCTCAGAGAGTTTCTTCCACTCTTCCTCTTCAATCATT
GAATCAGGGTTCTAAAGATTCTGCCACTGAGAGTGCTCCAAAGCAGGATTGGAACGATGCTCGTGAGGTACACTGCTCGAGAGAAAGGAGTAGGGCGGCGTGGAAAATAA
TTGAGGAGTATCTAATGCCCTTTGTGGATAAAAAGAAACACAAGATTTCAACGGAGTGTAGGCTTCACCCGGATAATGATATGTTCAGAGATCAAGAACAGCACAAAACG
CATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTATGAAGAGAAGTATCTTGATCAGCATTTTGACAATAGACACTATGATTTGCTGAATGTGAG
TCGAAACAAGTGCATGGCAGATCTTTGTGGTGCATTGCACTGTGATCATGTGATGGATTCAGTATCACAGAAGAAAAGTAAATGCAATCCTGCTGCTACTGCAAGAAACA
AACACATGTGTGAGGCTCTTGCTGATAGTTGTTTTCCCATCAACCAGGGTGTAGCGAGCCATCTTCACGAATTCTTCTTGCGCCAGTTCTGTGATGCACACACTTGTAGC
GGAAAGCCAAAACCGTTCTCGAGAGGTCGACAGGTTAGGACGAGTTGGTCCTACGTCGTTATTTCAGTTTTGACCATACTTATTGTGCTGTTTTTCTATGTCTTCGTTTA
CTTATATAAGAGAGGAATGCGAACGAGACCACAAGTGTTGAAGCGCCTCTCGGAAAGTGGAAGAAAGAAAAAACCTTCGTAG

mRNA sequence

Show/hide mRNA sequence

AGAGGCTTGCTTTCAATTCCGCTGGTGGGGGTTCCATGACATCGACGATGGGAAGGCGATCCATATGGGTTGCTCTTCTCGTCATCTCTCTTCTTTTTTCGTTGCGACCT
CAGAGAGTTTCTTCCACTCTTCCTCTTCAATCATTGAATCAGGGTTCTAAAGATTCTGCCACTGAGAGTGCTCCAAAGCAGGATTGGAACGATGCTCGTGAGGTACACTG
CTCGAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGTATCTAATGCCCTTTGTGGATAAAAAGAAACACAAGATTTCAACGGAGTGTAGGCTTCACCCGGATA
ATGATATGTTCAGAGATCAAGAACAGCACAAAACGCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTATGAAGAGAAGTATCTTGATCAGCAT
TTTGACAATAGACACTATGATTTGCTGAATGTGAGTCGAAACAAGTGCATGGCAGATCTTTGTGGTGCATTGCACTGTGATCATGTGATGGATTCAGTATCACAGAAGAA
AAGTAAATGCAATCCTGCTGCTACTGCAAGAAACAAACACATGTGTGAGGCTCTTGCTGATAGTTGTTTTCCCATCAACCAGGGTGTAGCGAGCCATCTTCACGAATTCT
TCTTGCGCCAGTTCTGTGATGCACACACTTGTAGCGGAAAGCCAAAACCGTTCTCGAGAGGTCGACAGGTTAGGACGAGTTGGTCCTACGTCGTTATTTCAGTTTTGACC
ATACTTATTGTGCTGTTTTTCTATGTCTTCGTTTACTTATATAAGAGAGGAATGCGAACGAGACCACAAGTGTTGAAGCGCCTCTCGGAAAGTGGAAGAAAGAAAAAACC
TTCGTAGAATAGAAAGAAACTCTTGCCCTTTCATTAACAATATGCATATTTATTTACGTAACGGGCCGTAACGGGCCAAACCGGACAACATCTTCTCGATCACTTTTTAG
GTAGAGAGGGCAAAGCTTGTTCGTTTTAAGGAGTTTGTTTTCCCTCATCATTTGTAATTATAGAGCTCTAAATACAAACCCATCATCTCGGGAGCAATAAGATTTTTGTA
TCATAACATTTCCTTTGATGGTAAATTCTAACTCTTAAACTTTCGGGAG

Protein sequence

Show/hide protein sequence

MTSTMGRRSIWVALLVISLLFSLRPQRVSSTLPLQSLNQGSKDSATESAPKQDWNDAREVHCSRERSRAAWKIIEEYLMPFVDKKKHKISTECRLHPDNDMFRDQEQHKT
HLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYDLLNVSRNKCMADLCGALHCDHVMDSVSQKKSKCNPAATARNKHMCEALADSCFPINQGVASHLHEFFLRQFCDAHTCS
GKPKPFSRGRQVRTSWSYVVISVLTILIVLFFYVFVYLYKRGMRTRPQVLKRLSESGRKKKPS

CmoCh11G016440 (gene) of Cucurbita moschata (Rifu) v1 genome