; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G017080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G017080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNase H domain-containing protein
Genome locationCmo_Chr11:12127604..12133691
RNA-Seq ExpressionCmoCh11G017080
SyntenyCmoCh11G017080
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588976.1 hypothetical protein SDJN03_17541, partial [Cucurbita argyrosperma subsp. sororia]2.7e-17499.04Show/hide
Query:  TITPSPTLCFSAQFLRHCHSFHFFRMEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTND
        TITPSPTLCFSAQFLRHCHSFHFFRMEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTND
Subjt:  TITPSPTLCFSAQFLRHCHSFHFFRMEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTND

Query:  LFGKLLACPYEQPSSTRGEMAEEYPKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTT
        LFGKLLACPYE+PSSTRG+MAEEYPKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTT
Subjt:  LFGKLLACPYEQPSSTRGEMAEEYPKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTT

Query:  ICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHL
        ICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+L
Subjt:  ICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHL

Query:  RDGIVVEDCKHK
        RDGIVVEDCKHK
Subjt:  RDGIVVEDCKHK

KAG7015252.1 hypothetical protein SDJN02_22886 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-14895.12Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYE+PSSTRG+MAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+LRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

XP_022928161.1 uncharacterized protein LOC111435064 [Cucurbita moschata]2.5e-159100Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

XP_022989146.1 uncharacterized protein LOC111486303 [Cucurbita maxima]9.8e-15697.91Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRG+MAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFV AD+VSTDS KQEITRDH SEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+LRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

XP_023529762.1 uncharacterized protein LOC111792488 [Cucurbita pepo subsp. pepo]4.8e-15597.56Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGL+SATYSISAANVTNDLFGKLLACPYEQPSST G+MAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVG DLVSTDS KQEITRDH SEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+LRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

TrEMBL top hitse value%identityAlignment
A0A0A0LHV8 RNase H domain-containing protein5.3e-10771.97Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEQPSSTRGEMAEEY
        MEGDKDAYYVV KGDVFGFYR+ KEL    G   FDP+ATIYKGYHLSKE+E+YL +HGL+SATYSISAANVT DLFGK+L C PYEQPS+TRG+MAEEY
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEQPSSTRGEMAEEY

Query:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL
         KA+RQ  V ENTE                                  YFLEFDGASKGNPGLAGAGAVLRANDG+T+C+LQEGVGIAT NVAEYRAVIL
Subjt:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL

Query:  GLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        GLKHALK+G KHI V+GDSKLVCMQVQGLWKLKN NMA  CKVAK+LKDKFVSFEI+H PR+QNSDADALAN AI L+DG+VVEDC HK
Subjt:  GLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

A0A1S3B7N6 uncharacterized protein LOC103487060 isoform X15.5e-11274.05Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEQPSSTRGEMAEEY
        MEGDKDAYYVV+KGDVFGFYRS KEL  Q G   FDPNATIYKGYHLSKE+E+YL SHGL+SATYSISAANVT DLFGK+L C PYEQPS+TRG+MAEEY
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEQPSSTRGEMAEEY

Query:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL
        PKA+RQ  V +NTE                                  YFLEFDGASKGNPGLAGAGA+LRANDG+T+CRLQEGVGIAT NVAEYRA+IL
Subjt:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL

Query:  GLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        GLKHALK+G KHI V+GDSKLVCMQVQGLWKLKNQNMA LCKVAK+LKDKFVSFEI+H+PR +NSDADALANRAIHL+DG+VVEDC HK
Subjt:  GLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

A0A6J1D7M4 uncharacterized protein LOC1110183841.8e-11563.27Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVV+KG V GFY+S KE EAQ G  IFDPNATIYKGYHLSKE+EQYLASHGL+SATYSISAANVT DLFGKLLAC YEQPSS RG+  EE  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVEN-TESGFVGADLVSTDSSKQEITRDHVSEAVPASS--------------------------------------------------------
         A R   V    E GFVGA+ VSTDS KQEI  DH  EAVPASS                                                        
Subjt:  KAKRQRNVEN-TESGFVGADLVSTDSSKQEITRDHVSEAVPASS--------------------------------------------------------

Query:  -----------------------------SRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVR
                                     S+ YFLEFDGASKGNPGLAGAGAVLRA DG+T+CRLQEGVGIATNNVAEYRAVILGLKHALK+GFKHI V+
Subjt:  -----------------------------SRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVR

Query:  GDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        GDSKLVCMQVQGLWK+KN NM  LCKVAK+LKDKF SFEI+HIPREQNSDADALANRAIHLRDG+VVEDCKHK
Subjt:  GDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

A0A6J1EJI9 uncharacterized protein LOC1114350641.2e-159100Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

A0A6J1JJ82 uncharacterized protein LOC1114863034.7e-15697.91Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRG+MAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFV AD+VSTDS KQEITRDH SEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK
        KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+LRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK

SwissProt top hitse value%identityAlignment
P54162 14.7 kDa ribonuclease H-like protein6.4e-0934.92Show/hide
Query:  DGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVS
        DGAS GNPG +G G  ++         +   +G+ TN  AE+ A+I G+K     G++ +S R DS +V  +   L  +KN       +    LK  F  
Subjt:  DGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVS

Query:  FEINHIPREQNSDADALANRAIHLRD
        F I  IP +QN  AD LA  AI L +
Subjt:  FEINHIPREQNSDADALANRAIHLRD

P64956 Uncharacterized protein Mb2253c2.4e-1943.65Show/hide
Query:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKD
        +E DG S+GNPG AG GAV+  A+  T +   ++ +G ATNNVAEYR +I GL  A+K G    +V  DSKLV  Q+ G WK+K+ ++  L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKD

Query:  KFVSFEINHIPREQNSDADALANRAI
        +F       +PR +N+ AD LAN A+
Subjt:  KFVSFEINHIPREQNSDADALANRAI

P9WLH4 Uncharacterized protein MT22872.4e-1943.65Show/hide
Query:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKD
        +E DG S+GNPG AG GAV+  A+  T +   ++ +G ATNNVAEYR +I GL  A+K G    +V  DSKLV  Q+ G WK+K+ ++  L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKD

Query:  KFVSFEINHIPREQNSDADALANRAI
        +F       +PR +N+ AD LAN A+
Subjt:  KFVSFEINHIPREQNSDADALANRAI

P9WLH5 Bifunctional protein Rv2228c2.4e-1943.65Show/hide
Query:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKD
        +E DG S+GNPG AG GAV+  A+  T +   ++ +G ATNNVAEYR +I GL  A+K G    +V  DSKLV  Q+ G WK+K+ ++  L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKD

Query:  KFVSFEINHIPREQNSDADALANRAI
        +F       +PR +N+ AD LAN A+
Subjt:  KFVSFEINHIPREQNSDADALANRAI

Q9HSF6 Ribonuclease HI3.1e-1943.9Show/hide
Query:  FDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFV
        FDGAS+GNPG A  G VL + DG  +    + +G ATNN AEY A+I  L+ A   GF  I +RGDS+LV  Q+ G W   + ++      A++L   F 
Subjt:  FDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFV

Query:  SFEINHIPREQNSDADALANRAI
         + I H+PR  N  ADALAN A+
Subjt:  SFEINHIPREQNSDADALANRAI

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein1.3e-6544.64Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        ++ +KDA++VVRKGDV G Y+   + +AQ GS +FD   ++YKGY L K++E+YL+S GL+   YS+ A+++ +D+FG L  C +++P+    +++E+  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
         ++ +   +  +       L S   S   + +    E     S    F+EFDGASKGNPGL+GA AVL+  DG+ ICR+++G+GIATNN AEY A+ILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIV
        K+A++ G+K+I V+GDSKLVCMQ++G WK+ ++ +A L K AK L +K VSFEI+H+ R  N+DAD  AN A+ L +G V
Subjt:  KHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-7148.95Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        ME +KDA+Y+VRKGD+ G YRS  E + QAGS +  P  ++YKGY   K +E  L+S G+++A +S++A++V +D FGKL+ CP +QPSS++GE   +  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE
         +KR +++ + ESG        +   KQ    + +   +P+S         +    +EFDGASKGNPG AGAGAVLRA+D + +  L+EGVG ATNNVAE
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE

Query:  YRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDG
        YRA++LGL+ AL  GFK++ V GDS LVCMQVQG WK  +  MA LCK AK+L + F +F+I HI RE+NS+AD  AN AI L DG
Subjt:  YRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDG

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-7148.95Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP
        ME +KDA+Y+VRKGD+ G YRS  E + QAGS +  P  ++YKGY   K +E  L+S G+++A +S++A++V +D FGKL+ CP +QPSS++GE   +  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE
         +KR +++ + ESG        +   KQ    + +   +P+S         +    +EFDGASKGNPG AGAGAVLRA+D + +  L+EGVG ATNNVAE
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE

Query:  YRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDG
        YRA++LGL+ AL  GFK++ V GDS LVCMQVQG WK  +  MA LCK AK+L + F +F+I HI RE+NS+AD  AN AI L DG
Subjt:  YRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDG

AT5G51080.1 RNase H family protein4.2e-5640.86Show/hide
Query:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYPKAK
        +KDA++VVRKGD+ G Y+   + +AQ GS ++DP  ++YKGY L K++E+ L++ GL+   Y   A ++  D+FG L  C ++          ++ P A 
Subjt:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYPKAK

Query:  RQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPA--SSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLK
                                  ++ + ++E  P+  +S     +EFDGASKGNPGL+GA AVL+  DG+ I ++++G+GIATNN AEY  +ILGLK
Subjt:  RQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPA--SSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLK

Query:  HALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIV
        HA++ G+  I V+ DSKLVCMQ++G WK+ ++ ++ L K AK L DK +SFEI+H+ R  NSDAD  AN A  L +G V
Subjt:  HALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIV

AT5G51080.2 RNase H family protein4.2e-5640.86Show/hide
Query:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYPKAK
        +KDA++VVRKGD+ G Y+   + +AQ GS ++DP  ++YKGY L K++E+ L++ GL+   Y   A ++  D+FG L  C ++          ++ P A 
Subjt:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEQPSSTRGEMAEEYPKAK

Query:  RQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPA--SSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLK
                                  ++ + ++E  P+  +S     +EFDGASKGNPGL+GA AVL+  DG+ I ++++G+GIATNN AEY  +ILGLK
Subjt:  RQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPA--SSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLK

Query:  HALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIV
        HA++ G+  I V+ DSKLVCMQ++G WK+ ++ ++ L K AK L DK +SFEI+H+ R  NSDAD  AN A  L +G V
Subjt:  HALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTGACATTTTTAGAATTTTCCTGATATGCACCATCACTCCTTCACCAACTCTCTGCTTCTCTGCACAATTTCTCCGCCATTGCCACTCCTTCCATTTCTTCAG
AATGGAGGGAGATAAAGATGCCTATTACGTCGTACGGAAAGGGGATGTTTTTGGATTTTACAGGAGTTTTAAGGAGCTCGAGGCTCAAGCTGGATCTCTGATATTTGATC
CTAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAATCCGAGCAGTACCTTGCATCGCATGGACTTCGAAGTGCAACTTACTCTATAAGTGCTGCTAATGTGACA
AACGATCTATTTGGAAAACTACTTGCTTGTCCTTATGAGCAACCATCTTCTACTAGAGGAGAAATGGCAGAAGAGTACCCCAAAGCTAAGAGACAACGAAACGTTGAGAA
TACCGAATCGGGGTTTGTAGGTGCCGACTTGGTCTCAACCGATTCTTCGAAACAAGAAATTACTCGGGATCATGTCTCTGAAGCCGTACCTGCTTCTTCAAGCCGTGTGT
ATTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGACTAGCAGGTGCTGGAGCTGTATTACGTGCGAACGATGGAACCACGATCTGTAGGTTGCAAGAAGGGGTT
GGGATTGCTACAAATAATGTTGCTGAATATCGTGCTGTAATATTAGGACTGAAACATGCTCTAAAGAGTGGCTTTAAACACATTTCTGTGCGAGGAGACTCCAAGCTCGT
TTGTATGCAGGTTCAGGGTCTATGGAAGCTCAAAAACCAAAATATGGCTACTTTGTGTAAAGTGGCAAAGGATCTCAAGGATAAGTTTGTGTCATTTGAGATCAACCACA
TCCCCAGGGAACAAAATTCCGACGCCGACGCTCTAGCCAACCGTGCTATACATCTCCGAGATGGCATTGTAGTAGAAGACTGCAAGCATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTGACATTTTTAGAATTTTCCTGATATGCACCATCACTCCTTCACCAACTCTCTGCTTCTCTGCACAATTTCTCCGCCATTGCCACTCCTTCCATTTCTTCAG
AATGGAGGGAGATAAAGATGCCTATTACGTCGTACGGAAAGGGGATGTTTTTGGATTTTACAGGAGTTTTAAGGAGCTCGAGGCTCAAGCTGGATCTCTGATATTTGATC
CTAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAATCCGAGCAGTACCTTGCATCGCATGGACTTCGAAGTGCAACTTACTCTATAAGTGCTGCTAATGTGACA
AACGATCTATTTGGAAAACTACTTGCTTGTCCTTATGAGCAACCATCTTCTACTAGAGGAGAAATGGCAGAAGAGTACCCCAAAGCTAAGAGACAACGAAACGTTGAGAA
TACCGAATCGGGGTTTGTAGGTGCCGACTTGGTCTCAACCGATTCTTCGAAACAAGAAATTACTCGGGATCATGTCTCTGAAGCCGTACCTGCTTCTTCAAGCCGTGTGT
ATTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGACTAGCAGGTGCTGGAGCTGTATTACGTGCGAACGATGGAACCACGATCTGTAGGTTGCAAGAAGGGGTT
GGGATTGCTACAAATAATGTTGCTGAATATCGTGCTGTAATATTAGGACTGAAACATGCTCTAAAGAGTGGCTTTAAACACATTTCTGTGCGAGGAGACTCCAAGCTCGT
TTGTATGCAGGTTCAGGGTCTATGGAAGCTCAAAAACCAAAATATGGCTACTTTGTGTAAAGTGGCAAAGGATCTCAAGGATAAGTTTGTGTCATTTGAGATCAACCACA
TCCCCAGGGAACAAAATTCCGACGCCGACGCTCTAGCCAACCGTGCTATACATCTCCGAGATGGCATTGTAGTAGAAGACTGCAAGCATAAATGA
Protein sequenceShow/hide protein sequence
MLGDIFRIFLICTITPSPTLCFSAQFLRHCHSFHFFRMEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVT
NDLFGKLLACPYEQPSSTRGEMAEEYPKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGV
GIATNNVAEYRAVILGLKHALKSGFKHISVRGDSKLVCMQVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIHLRDGIVVEDCKHK