CuGenDBv2

Gene ID	CmoCh11G017900
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Genome location	Cmo_Chr11:12584145..12587760
RNA-Seq Expression	CmoCh11G017900
Synteny	CmoCh11G017900
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7022770.1 hypothetical protein SDJN02_16506, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-109

87.35

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Query:  MIKSKKLEEEGKWALSFVEVLSNIIYDIVAQATRRYQSTLKFQAMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLS
        M+KSKKLEEEGKWALSFV          V +  R YQSTLKFQ+MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLS
Subjt:  MIKSKKLEEEGKWALSFVEVLSNIIYDIVAQATRRYQSTLKFQAMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLS

Query:  GMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALP
        GMDGIVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALP
Subjt:  GMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALP

Query:  ELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS
        ELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS
Subjt:  ELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS

XP_022928123.1 uncharacterized protein At5g43822 isoform X1 [Cucurbita moschata]

1.6e-97

100

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

XP_022928127.1 uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]

2.0e-105

100

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

XP_022989465.1 uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]

9.5e-103

97.51

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEF+FD ILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

XP_023529794.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo]

5.7e-100

97.01

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLS   GIVDALLAKQMESLQLVFSSIIKTM ELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EJ12 uncharacterized protein At5g43822 isoform X3

9.9e-106

100

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

A0A6J1EJF6 uncharacterized protein At5g43822 isoform X2

7.6e-98

100

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

A0A6J1EQT0 uncharacterized protein At5g43822 isoform X1

7.6e-98

100

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

A0A6J1JMF9 uncharacterized protein At5g43822 isoform X2

4.6e-103

97.51

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEF+FD ILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

A0A6J1JQC0 uncharacterized protein At5g43822 isoform X1

3.2e-96

98.4

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

2.7e-44

48.74

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+L  + GI DA++ +QM  L+ +  S+   MEE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL      + S +++++R+G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

1.9e-45

48.74

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+L  + GI DA++ +QM  L+ +  S+   MEE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL      + S +++++R+G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATAAAAAGCAAGAAGCTTGAAGAGGAAGGGAAGTGGGCACTGAGCTTTGTGGAGGTACTTTCCAATATAATATACGATATTGTGGCACAGGCGACTCGGCGTTATCA
AAGTACCCTAAAATTCCAAGCAATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTTAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGA
TTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTGCTTCAAGATCCTAACAATTATGGCAGTCTGTCTGGCATGGATGGCATTGTAGATGCGCTATTG
GCTAAGCAGATGGAATCGTTGCAACTCGTTTTCTCGTCTATTATAAAGACAATGGAAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCA
ACTAATCAAAGGTGGTTCGAATCAGCCATCAACAAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGAAGATTGCTTGAATGGGTTAAGGCTTCTATGTGACA
TGCACCGCTCTGAGTACCATCTTAAAGAGTCTATGGTCTCAGCACTTCCAGAACTTTTCTGGAAACCCAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTT
TTGGTTGATCAGCCTAACATTCGGAAAGAGGAAGTTGAATTTATCTTTGATACCATACTGGTTCCGGAAGCTAGCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIKSKKLEEEGKWALSFVEVLSNIIYDIVAQATRRYQSTLKFQAMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALL
AKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQL
LVDQPNIRKEEVEFIFDTILVPEAS

CmoCh11G017900 (gene) of Cucurbita moschata (Rifu) v1 genome