; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G018250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G018250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAP complex subunit sigma
Genome locationCmo_Chr11:12772177..12774586
RNA-Seq ExpressionCmoCh11G018250
SyntenyCmoCh11G018250
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0030001 - metal ion transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030117 - membrane coat (cellular component)
GO:0031410 - cytoplasmic vesicle (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9602878.1 hypothetical protein IFM89_031824 [Coptis chinensis]1.5e-5294.02Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSKEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET
        IHFVLLISRQGKVRLTKWYSPYSQKER+KEDNELE+LEIIHH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIAGELQE+SKKTVARLIAAQDSLVET
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSKEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET

Query:  AKEQASSISNIIAQATK
        AKE+A SISNIIAQATK
Subjt:  AKEQASSISNIIAQATK

KAG6516773.1 hypothetical protein ZIOFF_027247 [Zingiber officinale]1.2e-4979.86Show/hide
Query:  GQGTVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK----------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEL
        G+G  L R  QIHFVLLISRQGKVRLTKWYSPYSQKER+K                EDNELEILEIIHH+VEILDRYFGSVCELDLIFNFHKAYYILDE+
Subjt:  GQGTVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK----------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEL

Query:  LIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        LIAGELQESSKK VARLIAAQD LVE AKEQASSISN+IAQATK
Subjt:  LIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

KAG6589096.1 AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4871.52Show/hide
Query:  DRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFG
        D    IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           EDNELEILEIIHHYVEILDRYFG
Subjt:  DRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFG

Query:  SVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        SVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  SVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

KAG7022803.1 AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-4972.84Show/hide
Query:  DQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVC
        D IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           EDNELEILEIIHHYVEILDRYFGSVC
Subjt:  DQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVC

Query:  ELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        ELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  ELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

XP_022135730.1 AP-1 complex subunit sigma-2 [Momordica charantia]1.3e-4873.12Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           EDNELEILEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

TrEMBL top hitse value%identityAlignment
A0A4D6MMQ4 Solute carrier family 398.5e-4965.17Show/hide
Query:  GQGTVL-------DRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEI
        G+G+V+       + R+ IHFVLLISRQGKVRLTKWYSPYSQKER+K                                           EDNELE+LEI
Subjt:  GQGTVL-------DRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEI

Query:  IHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKT+ARLIAAQDSLVETAKE+ASSISNIIAQATK
Subjt:  IHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

A0A5D3D5G1 AP-1 complex subunit sigma-26.5e-4969.64Show/hide
Query:  TVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDR
        T   R   IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           +DNELE+LEIIHHYVEILDR
Subjt:  TVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDR

Query:  YFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        YFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  YFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

A0A6J1C1K2 AP complex subunit sigma6.5e-4973.12Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           EDNELEILEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

A0A6J1EQV1 AP complex subunit sigma6.5e-4973.12Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           EDNELEILEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

A0A6J1JMH4 AP complex subunit sigma6.5e-4973.12Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLLISRQGKVRLTKWYSPYSQKERSK                                           EDNELEILEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

SwissProt top hitse value%identityAlignment
B0G185 AP-1 complex subunit sigma-23.3e-3455.32Show/hide
Query:  HFVLLISRQGKVRLTKWYSPYSQKERS-------------------------------------------KEDNELEILEIIHHYVEILDRYFGSVCELD
        HF+LL+SRQGK RLTKWYSP++ KE+S                                           +EDNEL +LEIIHH+VEILDRYFG+VCELD
Subjt:  HFVLLISRQGKVRLTKWYSPYSQKERS-------------------------------------------KEDNELEILEIIHHYVEILDRYFGSVCELD

Query:  LIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE
        LIFNFHKAYYILDEL++AGELQE+SKKTV RLI+ QD+L+E
Subjt:  LIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE

O23685 AP-1 complex subunit sigma-22.4e-4867.92Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLL+SRQGKVRLTKWYSPY+QKERSK                                           EDNELE+LEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT
        DLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT

Q3ZBS3 AP-1 complex subunit sigma-29.8e-2646.58Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        + F+LL SRQGK+RL KWY P S KE+ K                                           +DNEL  LEIIH YVE+LD+YFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE
        D+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE

Q7TN05 AP-1 complex subunit sigma-34.4e-2645.21Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHF+LL SRQGK+RL KWY+    KER K                                           +DNEL  LEI+H YVE+LD+YFG+VCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE
        D+IFNF KAY+ILDE +I GE+QE+SKKT  + I   D L ET +E
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE

Q8LEZ8 AP-1 complex subunit sigma-13.1e-4867.5Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLL+SRQGKVRLTKWYSPY+QKERSK                                            DNELE+LEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        DLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein1.4e-1938.57Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        I F+LL +RQGK RL K+Y P  + E+ K                                            DNEL  LE IH +VEILD +F +VCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL
        DL+FNFHK Y ILDE ++AGELQE+SK+ +   ++  + L
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL

AT2G17380.1 associated protein 192.2e-4967.5Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLL+SRQGKVRLTKWYSPY+QKERSK                                            DNELE+LEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
        DLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

AT2G19790.1 SNARE-like superfamily protein2.4e-1128.26Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKER-------------------------------------------SKEDNELEILEIIHHYVEILDRYFGSVCEL
        I F+L++++QG+ RL ++Y   + +ER                                             ++NEL ILE IH  VE +D++FG+VCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKER-------------------------------------------SKEDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD
        D++F+  KA+++L+E+++ G + E+SK  +   I   D
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD

AT4G35410.1 Clathrin adaptor complex small chain family protein1.3e-2557.41Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLL+SRQGKVRLTKWYSPY+QKERSK                                           EDNELE+LEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHK
        DLIFNFHK
Subjt:  DLIFNFHK

AT4G35410.2 Clathrin adaptor complex small chain family protein1.7e-4967.92Show/hide
Query:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL
        IHFVLL+SRQGKVRLTKWYSPY+QKERSK                                           EDNELE+LEIIHHYVEILDRYFGSVCEL
Subjt:  IHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------------------------EDNELEILEIIHHYVEILDRYFGSVCEL

Query:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT
        DLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Subjt:  DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCCGCCCATTTTGCACCCCGAAGCCTTCGGCGGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCAAATTCACTTCGTGCTTCTTATAAGTAGACA
AGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGAGGACAACGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTT
TGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGC
AAGAAAACAGTAGCAAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCCGCCCATTTTGCACCCCGAAGCCTTCGGCGGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCAAATTCACTTCGTGCTTCTTATAAGTAGACA
AGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGAGGACAACGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTT
TGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGC
AAGAAAACAGTAGCAAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAGAAATA
CTTGGAAGAGTTTTTGGGGCTTGTGTTTTTTTGTAGGTAGGGGATGATGAAGGGTCAGACTCCCTTCTTTTAGGGGCTTGTTTTTTGTTTGACCTTCCATTCTTTCCTTC
TCTCTCGGTTTCATATAAATATATACATGTTTGGAAACAATTGTTAAATGAATACGACTCTCTACAATGGTATGATATTGTCCACTTTGTG
Protein sequenceShow/hide protein sequence
MNSAHFAPRSLRRRNNGQGTVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSKEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESS
KKTVARLIAAQDSLVETAKEQASSISNIIAQATK