CuGenDBv2

Gene ID	CmoCh11G018680
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Eukaryotic translation initiation factor 4C
Genome location	Cmo_Chr11:12988935..12989372
RNA-Seq Expression	CmoCh11G018680
Synteny	CmoCh11G018680
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR001253 - Translation initiation factor 1A (eIF-1A) IPR006196 - RNA-binding domain, S1, IF1 type IPR012340 - Nucleic acid-binding, OB-fold IPR018104 - Translation initiation factor 1A (eIF-1A), conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004144524.1 eukaryotic translation initiation factor 1A [Cucumis sativus]

2.2e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

XP_004304062.1 PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca]

2.3e-72

95.17

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGI GG+D++DE GGD YIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

XP_022135622.1 eukaryotic translation initiation factor 1A-like [Momordica charantia]

3.2e-74

97.93

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

XP_022930658.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata]

1.0e-75

100

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

XP_031490608.1 eukaryotic translation initiation factor 1A [Nymphaea colorata]

1.0e-72

95.86

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGI GG+DD+DEGG D YIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1Y5 Eukaryotic translation initiation factor 4C

1.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

A0A1S3C1S5 Eukaryotic translation initiation factor 4C

1.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

A0A5A7UZV0 Eukaryotic translation initiation factor 4C

1.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

A0A6J1EVW9 Eukaryotic translation initiation factor 4C

4.8e-76

100

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

A0A6J1JL52 Eukaryotic translation initiation factor 4C

4.8e-76

100

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

SwissProt top hits

e value

%identity

Alignment

P47813 Eukaryotic translation initiation factor 1A, X-chromosomal

1.0e-51

74.48

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        R LKAYGELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

P47815 Eukaryotic translation initiation factor 1A

8.2e-65

84.93

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDA-YIEFEDEDIDRI
        RLLKAYGELP+  RLNEG+   +D  +EG GD+ YI+FEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDA-YIEFEDEDIDRI

P56331 Eukaryotic translation initiation factor 1A

7.9e-68

89.73

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGI-VGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELP+NTRLNEGI  GG+D++ +   D YIEFEDEDID+I
Subjt:  RLLKAYGELPENTRLNEGI-VGGMDDDDEGGGDAYIEFEDEDIDRI

Q5RA42 Eukaryotic translation initiation factor 1A, X-chromosomal

1.0e-51

74.48

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        R LKAYGELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal

1.0e-51

74.48

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        R LKAYGELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

Arabidopsis top hits

e value

%identity

Alignment

AT2G04520.1 Nucleic acid-binding, OB-fold-like protein

1.3e-73

91.72

Show/hide

Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVG ++DDD+   D Y+EFEDEDIDRI
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein

1.4e-72

91.72

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVG +DDDD+  G+ YIEFEDEDIDRI
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein

1.4e-72

91.72

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI
        RLLKAYGELPENTRLNEGIVG +DDDD+  G+ YIEFEDEDIDRI
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein

5.8e-66

93.75

Show/hide

Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYGELPENTRLNEGIVGGMDDDDE
        RLLKAYGELPENTRLNEGIVG +DDDD+
Subjt:  RLLKAYGELPENTRLNEGIVGGMDDDDE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATAT
GCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGACGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGG
ATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCT
TATGGTGAGCTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGACGATGACGATGAAGGTGGTGGTGATGCTTATATCGAGTTTGAGGACGAA
GATATTGATAGGATCTAG

mRNA sequence

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Protein sequence

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MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKA
YGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI

CmoCh11G018680 (gene) of Cucurbita moschata (Rifu) v1 genome