; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G018690 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G018690
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationCmo_Chr11:12990780..12992306
RNA-Seq ExpressionCmoCh11G018690
SyntenyCmoCh11G018690
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589134.1 hypothetical protein SDJN03_17699, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7198.62Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDL+KPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]3.4e-6893.1Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

XP_022930657.1 uncharacterized protein At4g28440-like [Cucurbita moschata]6.0e-73100Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]3.9e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.2e-6893.79Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein2.8e-6893.1Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FE  EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284401.7e-6893.1Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein1.7e-6893.1Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

A0A6J1ER67 uncharacterized protein At4g28440-like2.9e-73100Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like1.9e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284408.5e-4669.17Show/hide
Query:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVF+KVE LKPG++GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQVDLMKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNV
        VDKWGRIE    A F V EDNNLSLVEYEL+NV
Subjt:  VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNV

Q97W73 Single-stranded DNA binding protein Ssb8.1e-0428.7Show/hide
Query:  KVEDLKPGSSGHTLTVKVVSSKNVK-VVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR
        KV +LKP      +TV+V+ +   + +  K G           +  ISE +VGDETG +  T        +K G  V + NA    FKG ++L  +   +
Subjt:  KVEDLKPGSSGHTLTVKVVSSKNVK-VVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR

Query:  IEVAEPAD
         ++AE ++
Subjt:  IEVAEPAD

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.8e-4366.91Show/hide
Query:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV +L+PG++GH+L VKVV++K V +   GGR   P +R     RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRIEVA-EPADFEVIEDNNLSLVEYELVNVE
        AVD+WGR+EVA EP D  V +DNNLSL+EYELV+VE
Subjt:  AVDKWGRIEVA-EPADFEVIEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.8e-4366.91Show/hide
Query:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV +L+PG++GH+L VKVV++K V +   GGR   P +R     RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRIEVA-EPADFEVIEDNNLSLVEYELVNVE
        AVD+WGR+EVA EP D  V +DNNLSL+EYELV+VE
Subjt:  AVDKWGRIEVA-EPADFEVIEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein7.4e-4568.66Show/hide
Query:  RKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAV
        +KP F KV+ L+PG+SGH + VK+VS+   K+V + GR+  P AR     RISEC+VGDETG IVFTARNDQVDLMK G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        DKWGR+EV EPA F+V ED N+SL+EYELVNV E
Subjt:  DKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein7.9e-4772.59Show/hide
Query:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
        K+KPVF+KV+ LKPG+SGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQV+LMKPG TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE
        VDKWGRIE  EPAD  V EDNNLSLVEYELVNV E
Subjt:  VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein6.1e-4769.17Show/hide
Query:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVF+KVE LKPG++GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQVDLMKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNV
        VDKWGRIE    A F V EDNNLSLVEYEL+NV
Subjt:  VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCAGCAGTGAATGCCCCGGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAG
CTCCAAAAATGTCAAGGTTGTCAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CTATCGTCTTCACAGCTCGAAATGACCAAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCA
GTAGATAAATGGGGACGAATTGAAGTCGCCGAACCAGCTGACTTCGAGGTTATAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
GGGTTTTGATCCTCAGGTTCGATTTCATTCTCCATTTTCACGTTTCCCTTTCATCGGCGACAGGGTTTCGTTCTGTTACTTCGATTTCCATGGCGACGCCAGCAGTGAAT
GCCCCGGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAGCTCCAAAAATGTCAAGGTTGT
CAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCTATCGTCTTCACAGCTCGAA
ATGACCAAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATT
GAAGTCGCCGAACCAGCTGACTTCGAGGTTATAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGACTTCGAAGTATGCAGTGTTAATT
TATCATGGATTTACATTCTCTATTGTGTGGTGGACTGCTTTTTTACTGGTATACAGTTTTATATGGGAACACAAATCTTGCTGGAGGGTAATATAAGTTGACTATTGCTG
TGACTACTAAGTGTTCTACCTGCTTAATTTGGGTCTGAATGTGATACAGATCTTGGAAGGCAAGGCCAAATGTTAATTTATCTGCTTGTATTGGTTGGAAAAGTATATAG
AAGGTTTTACTCATGGATCTTCGTTATGTTGCATCACTTGTCTCTAACTATTGTGACATTCAGCTAACTTCTTTGATCAATTGTTTCCTTATCAAAAGGTGAGC
Protein sequenceShow/hide protein sequence
MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
VDKWGRIEVAEPADFEVIEDNNLSLVEYELVNVEE