; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G018800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G018800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionhomeobox protein knotted-1-like LET6
Genome locationCmo_Chr11:13095540..13098750
RNA-Seq ExpressionCmoCh11G018800
SyntenyCmoCh11G018800
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR005539 - ELK domain
IPR005540 - KNOX1
IPR005541 - KNOX2
IPR008422 - Homeobox KN domain
IPR009057 - Homeobox-like domain superfamily
IPR017970 - Homeobox, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589145.1 Homeobox protein SBH1, partial [Cucurbita argyrosperma subsp. sororia]3.4e-16097.92Show/hide
Query:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
        MDRGLIMFDHN  NNNDSDSNN+KMFLPYNDHV++CR KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
Subjt:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE

Query:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
        MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
Subjt:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP

Query:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

KAG7022846.1 Homeobox protein SBH1 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-16197.93Show/hide
Query:  MDRGLIMFDH--NNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAY
        MDRGLIMFDH  NNDNNNDSDSNN+KMFLPYNDHV++CR KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAY
Subjt:  MDRGLIMFDH--NNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAY

Query:  CEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGK
        CEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGK
Subjt:  CEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGK

Query:  LPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        LPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  LPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

XP_022930731.1 homeobox protein knotted-1-like LET6 [Cucurbita moschata]1.0e-164100Show/hide
Query:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
        MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
Subjt:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE

Query:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
        MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
Subjt:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP

Query:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

XP_022988875.1 homeobox protein knotted-1-like LET6 [Cucurbita maxima]6.9e-16198.61Show/hide
Query:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
        MDRGLIMFDHN  NNNDSDSNNKKMFLPYNDHVQ+CR KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
Subjt:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE

Query:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
        MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
Subjt:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP

Query:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

XP_023529301.1 homeobox protein knotted-1-like LET6 [Cucurbita pepo subsp. pepo]4.4e-16097.59Show/hide
Query:  MDRGLIMFDHNN---DNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEA
        MDRGLIMFDHNN   DNNNDSDSNNKKMFLPYNDH QSCR KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTV RGDDPGLDQFMEA
Subjt:  MDRGLIMFDHNN---DNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEA

Query:  YCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNG
        YCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYL SLKQEFLKKKKNG
Subjt:  YCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNG

Query:  KLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        KLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  KLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

TrEMBL top hitse value%identityAlignment
A0A0A0K5G5 Uncharacterized protein2.0e-12681.18Show/hide
Query:  HNNDNNNDSDSNNKKMFLPY------NDHV----QSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYC
        +NN+NNN         FLP       NDHV     + + K+MAHPLFPRLL +YVNCQKVGAPP+VVARLEQAC VA G+CR    G+DP LDQFMEAYC
Subjt:  HNNDNNNDSDSNNKKMFLPY------NDHV----QSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYC

Query:  EMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKL
        EML+KYEQELTKPFKEAM+FFSRIESQLKA A    SSDG+ELVGQNECSKEIE VDMNENYIDPQAE KELKGQLLRKYSGYLGSLKQEFLKKKKNGKL
Subjt:  EMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKL

Query:  PKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSST
        PKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKP+EDMQFVVMDA HPHYYLDN+ICNPFSMDCSS+
Subjt:  PKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSST

A0A1S3C0Z5 homeobox protein knotted-1-like LET61.5e-12479.24Show/hide
Query:  HNNDNNNDSDSNNKKMFLPY------NDH----VQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYC
        +NN+NNN         FLP       NDH      + + K+MAHPLFPRLL +YVNCQKVGAPP+VVARLEQAC VA G+CR    G+DP LDQFMEAYC
Subjt:  HNNDNNNDSDSNNKKMFLPY------NDH----VQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYC

Query:  EMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKL
        EML+KYEQELTKPFKEAM+FFSRIESQLKA A    SSDG++LV QN+CSKEIE VDMNENYIDPQAE KELKGQLLRKYSGYLGSLKQEFLKKKKNGKL
Subjt:  EMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKL

Query:  PKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        PKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKP+EDMQFVVMD  HPHYYLDN+ICNPFSMDCSS+ F
Subjt:  PKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

A0A6J1C313 homeobox protein SBH1-like1.0e-13080.4Show/hide
Query:  MFDHNNDNNND-----------SDSNNKKMFLPYNDH-------VQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDD
        + D+NN+N N+           S +     F+P   H         SCR K+MAHPLFPRLLA+YVNCQKVGAPP+VVARLEQAC VA G+CR  ARGDD
Subjt:  MFDHNNDNNND-----------SDSNNKKMFLPYNDH-------VQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDD

Query:  PGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQ
        P LDQFMEAYCEMLSKYEQEL+KPFKEAM+FFSRIESQLKALA SSS+SDG ELVGQ+ECSKE+E VDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQ
Subjt:  PGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQ

Query:  EFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLIC-NPFSMDCSSTL
        EFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDN+IC NPFSMDCSSTL
Subjt:  EFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLIC-NPFSMDCSSTL

Query:  F
        F
Subjt:  F

A0A6J1ERR4 homeobox protein knotted-1-like LET65.0e-165100Show/hide
Query:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
        MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
Subjt:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE

Query:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
        MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
Subjt:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP

Query:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

A0A6J1JKT8 homeobox protein knotted-1-like LET63.3e-16198.61Show/hide
Query:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
        MDRGLIMFDHN  NNNDSDSNNKKMFLPYNDHVQ+CR KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE
Subjt:  MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCE

Query:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
        MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
Subjt:  MLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP

Query:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
        KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Subjt:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

SwissProt top hitse value%identityAlignment
O22299 Homeobox protein knotted-1-like LET66.3e-10163.73Show/hide
Query:  DNNNDSDSNNKKMFLPY-------------NDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR------GDDPGLDQ
        +NNN   SNN  +FLP+             N    S + K+MAHP + RLL +Y+NCQK+GAPP+VVARLE+ C  +A   R+ +       G+DP LDQ
Subjt:  DNNNDSDSNNKKMFLPY-------------NDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR------GDDPGLDQ

Query:  FMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYEL-VGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLK
        FMEAYCEML+KYEQEL+KPFKEAMVF SRIE Q KAL  + +SS    L    +      E VD+N ++IDPQAE++ELKGQLLRKYSGYLGSLKQEF+K
Subjt:  FMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYEL-VGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLK

Query:  KKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTL
        K+K GKLPKEARQQL+DWW RH KWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYY+DN++ N F MD + +L
Subjt:  KKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTL

O65034 Homeobox protein knotted-1-like 122.3e-7456.87Show/hide
Query:  QSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGD--DPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALA
        +S + K+MAHP +  LLA+Y++CQKVGAPP+V+ RL    T A  + R   R D  DP LDQFMEAYC ML+KY +ELT+P  EAM F  R+ESQL  +A
Subjt:  QSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGD--DPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALA

Query:  ASSSS----------SDG-YELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYP
          +            +DG  E VG +E   +    +     IDP+AE+KELK QLL+KYSGYL SL+QEF KKKK GKLPKEARQ+LL WW  HYKWPYP
Subjt:  ASSSS----------SDG-YELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYP

Query:  SESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMD
        SE++K+ALAESTGLD KQINNWFINQRKRHWKPSEDM FV+M+  HP       +  PF  D
Subjt:  SESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMD

P46608 Homeobox protein SBH11.3e-9866.2Show/hide
Query:  HNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQAC----TVAAGNCRTVAR--GDDPGLDQFMEAYCEMLS
        H N+NNN S S++            + + K+MAHP + RLLA+YVNCQKVGAPP+VVARLE+AC    T+A G+    +   G+DP LDQFMEAYCEML+
Subjt:  HNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQAC----TVAAGNCRTVAR--GDDPGLDQFMEAYCEMLS

Query:  KYEQELTKPFKEAMVFFSRIESQLKALAASSS---SSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP
        KYEQEL+KP KEAM+F  RIE Q K L  SSS   S++G +  G +E     E VD++ N IDPQAE+++LKGQLLRKYSGYLGSLKQEF+KK+K GKLP
Subjt:  KYEQELTKPFKEAMVFFSRIESQLKALAASSS---SSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP

Query:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCS
        KEARQQLL+WW+RHYKWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMD +HPHYY+DN++ NPF MD S
Subjt:  KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCS

Q38874 Homeobox protein SHOOT MERISTEMLESS9.8e-10271.76Show/hide
Query:  SCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKAL
        S + K+MAHP + RLLA+YVNCQKVGAPP+VVARLE+AC+ AA        T   G+DPGLDQFMEAYCEML KYEQEL+KPFKEAMVF  R+E Q K+L
Subjt:  SCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKAL

Query:  AASSSSS-DGY--ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVA
        + SS SS  GY    + +N      E VDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQLLDWWSRHYKWPYPSE QK+A
Subjt:  AASSSSS-DGY--ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVA

Query:  LAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HYYLDNLICNPFSMD-CSSTL
        LAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP HY++DN++ NPF MD  SST+
Subjt:  LAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HYYLDNLICNPFSMD-CSSTL

Q9M6D9 Homeobox protein SHOOT MERISTEMLESS1.7e-9870.92Show/hide
Query:  KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASS
        K+MAHP + RLL +YVNCQKVGAPP+V ARLE+ C+ AA        T + G+DPGLDQFMEAYCEML KYEQEL+KPFKEAMVF   +E Q K+L+ SS
Subjt:  KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASS

Query:  SSSDGY--ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAEST
         SS GY    + +N      E VDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQLLDWWSRHYKWPYPSE QK+ALAEST
Subjt:  SSSDGY--ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAEST

Query:  GLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HYYLDNLICNPFSMD
        GLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP HY++ N++ NPF +D
Subjt:  GLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HYYLDNLICNPFSMD

Arabidopsis top hitse value%identityAlignment
AT1G23380.1 KNOTTED1-like homeobox gene 61.9e-6048.36Show/hide
Query:  KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQ--------ACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKAL
        K+  HP +PRLL +Y++CQKVGAPP++   LE+           V   +C     G DP LD+FME YC++L KY+ +L +PF EA  F ++IE QL+ L
Subjt:  KLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQ--------ACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKAL

Query:  AASSSSSDGYELVGQNECSKEIEVVDMNENYID--PQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVAL
             S+ G    G     +E+   D +E   D   + E+++LK +LLRK+   + +LK EF KKKK GKLP+EARQ LLDWW+ HYKWPYP+E  K+AL
Subjt:  AASSSSSDGYELVGQNECSKEIEVVDMNENYID--PQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVAL

Query:  AESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD
        A++TGLD KQINNWFINQRKRHWKPSE+M F +MD +   ++ +
Subjt:  AESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD

AT1G23380.2 KNOTTED1-like homeobox gene 66.2e-5947.97Show/hide
Query:  KLMAHPLFPRLLASYVNCQK--VGAPPDVVARLEQ--------ACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLK
        K+  HP +PRLL +Y++CQK  VGAPP++   LE+           V   +C     G DP LD+FME YC++L KY+ +L +PF EA  F ++IE QL+
Subjt:  KLMAHPLFPRLLASYVNCQK--VGAPPDVVARLEQ--------ACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLK

Query:  ALAASSSSSDGYELVGQNECSKEIEVVDMNENYID--PQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKV
         L     S+ G    G     +E+   D +E   D   + E+++LK +LLRK+   + +LK EF KKKK GKLP+EARQ LLDWW+ HYKWPYP+E  K+
Subjt:  ALAASSSSSDGYELVGQNECSKEIEVVDMNENYID--PQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKV

Query:  ALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD
        ALA++TGLD KQINNWFINQRKRHWKPSE+M F +MD +   ++ +
Subjt:  ALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD

AT1G62360.1 KNOX/ELK homeobox transcription factor7.0e-10371.76Show/hide
Query:  SCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKAL
        S + K+MAHP + RLLA+YVNCQKVGAPP+VVARLE+AC+ AA        T   G+DPGLDQFMEAYCEML KYEQEL+KPFKEAMVF  R+E Q K+L
Subjt:  SCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKAL

Query:  AASSSSS-DGY--ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVA
        + SS SS  GY    + +N      E VDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQLLDWWSRHYKWPYPSE QK+A
Subjt:  AASSSSS-DGY--ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVA

Query:  LAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HYYLDNLICNPFSMD-CSSTL
        LAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP HY++DN++ NPF MD  SST+
Subjt:  LAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HYYLDNLICNPFSMD-CSSTL

AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 26.6e-6148.55Show/hide
Query:  RDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR----GDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAA
        + K+ +HPL+PRLL +Y++CQKVGAP ++   LE+         R VA     G DP LD+FME YC++L KY+ +L +PF EA  F ++IE QL+ L  
Subjt:  RDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR----GDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAA

Query:  SSSSSDGYELVGQNECSKEI-EVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAES
          +S+      G     +E+ E  D+  +    ++ +++LK QLLRK+  ++ SLK EF KKKK GKLP+EARQ LLDWW+ H KWPYP+E  K++LAE 
Subjt:  SSSSSDGYELVGQNECSKEI-EVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAES

Query:  TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD
        TGLD KQINNWFINQRKRHWKPSE+M F +MD ++  ++ +
Subjt:  TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD

AT4G08150.1 KNOTTED-like from Arabidopsis thaliana5.7e-7354.09Show/hide
Query:  NDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQA-----CTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYE
        N+NNND+ S+           V++ + K++AHP +  LL +Y++CQK+GAPPDVV R+  A                A   DP LDQFMEAYC+ML KY 
Subjt:  NDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQA-----CTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYE

Query:  QELTKPFKEAMVFFSRIESQLKALAAS-----------SSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKK
        +ELT+P +EAM F  RIESQL  L  S           S +    +   +N    E E+ +     IDP+AE++ELK  LL+KYSGYL SLKQE  KKKK
Subjt:  QELTKPFKEAMVFFSRIESQLKALAAS-----------SSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKK

Query:  NGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDA-AHPHY---YLD
         GKLPKEARQ+LL WW  HYKWPYPSES+KVALAESTGLD KQINNWFINQRKRHWKPSEDMQF+VMD   HPH+   Y+D
Subjt:  NGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDA-AHPHY---YLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGTGGCTTGATCATGTTCGATCATAACAACGACAACAACAACGACAGCGATAGCAACAACAAGAAGATGTTTTTGCCTTACAATGATCATGTTCAAAGTTGTAG
AGATAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTA
CGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACT
AAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGA
GTGTTCGAAGGAGATCGAGGTCGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAGGAGAAAGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCG
GTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCA
TCGGAGTCGCAAAAGGTAGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACAT
GCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGACTGTTCTTCCACTCTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCGTGGCTTGATCATGTTCGATCATAACAACGACAACAACAACGACAGCGATAGCAACAACAAGAAGATGTTTTTGCCTTACAATGATCATGTTCAAAGTTGTAG
AGATAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTA
CGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACT
AAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGA
GTGTTCGAAGGAGATCGAGGTCGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAGGAGAAAGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCG
GTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCA
TCGGAGTCGCAAAAGGTAGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACAT
GCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGACTGTTCTTCCACTCTCTTCTGATTACATATCATTT
TAATGTTGGTTTGTTTATGTTCTAACTCATGTTCATTATGTTTTGAATTGTTCTACATGTTGAACTCAAACCCTTTCTCTTGATTCTTGGTTTAGGGTTCTTGTATTGTA
TGCGTTTGTTTTAGTACTAATTTAGCTCGGTTCACATTGTTTAACTTTTCGAAGTTTTATTTTTAAAGTACAATAGAAAATCTCGTTCCTTG
Protein sequenceShow/hide protein sequence
MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELT
KPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYP
SESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF