CuGenDBv2

Gene ID	CmoCh11G018830
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Beta-adaptin-like protein
Genome location	Cmo_Chr11:13105208..13105825
RNA-Seq Expression	CmoCh11G018830
Synteny	CmoCh11G018830
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0016192 - vesicle-mediated transport (biological process) GO:0030131 - clathrin adaptor complex (cellular component) GO:0030276 - clathrin binding (molecular function)
InterPro domains	IPR009028 - Coatomer/calthrin adaptor appendage, C-terminal subdomain IPR012295 - TBP domain superfamily IPR015151 - Beta-adaptin appendage, C-terminal subdomain IPR026739 - AP complex subunit beta

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040220.1 beta-adaptin-like protein B [Cucumis melo var. makuwa]

1.4e-19

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RDF TILINNV+ I++RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

TYK07128.1 beta-adaptin-like protein B [Cucumis melo var. makuwa]

1.4e-19

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RDF TILINNV+ I++RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

XP_004144506.1 beta-adaptin-like protein C [Cucumis sativus]

3.2e-19

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RD  TILINNV+ IV+RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

XP_008455466.1 PREDICTED: beta-adaptin-like protein B [Cucumis melo]

1.4e-19

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RDF TILINNV+ I++RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

XP_022157680.1 beta-adaptin-like protein B [Momordica charantia]

1.6e-18

66.22

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     RSLPDSNEVS+DF  I++NN++ ++DRLAATNMFFI K KHANQDVFYFSTK  RGIP L+E+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1I7 Beta-adaptin-like protein

1.5e-19

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RD  TILINNV+ IV+RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

A0A1S3C1P5 Beta-adaptin-like protein

6.9e-20

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RDF TILINNV+ I++RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

A0A5A7TA79 Beta-adaptin-like protein

6.9e-20

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RDF TILINNV+ I++RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

A0A5D3C7J2 Beta-adaptin-like protein B

6.9e-20

74.32

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R S     RSLPDSNEV RDF TILINNV+ I++RLAATNMFFI K KHANQDVFYFSTK  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

A0A6J1DTS4 Beta-adaptin-like protein

7.7e-19

66.22

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     RSLPDSNEVS+DF  I++NN++ ++DRLAATNMFFI K KHANQDVFYFSTK  RGIP L+E+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

SwissProt top hits

e value

%identity

Alignment

O81742 Beta-adaptin-like protein C

7.1e-14

54.05

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     +SLPDSNEV ++F  I I +V+  +D LAA+NMFFI K K+ NQDV Y S K  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

Q54X82 AP-1 complex subunit beta

6.7e-04

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILIN-NVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        R+ R S  +  +S+P+SNE S +    L + +VD I+ RL + N+F IV+ K  NQ++ + S K    + +LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILIN-NVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

Q9SUS3 Beta-adaptin-like protein B

8.7e-12

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     RSLPDSNEV ++F  I I +V+  ++ L A NMFFI K K+ NQDV Y S K  R +P LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

Arabidopsis top hits

e value

%identity

Alignment

AT4G11380.1 Adaptin family protein

6.2e-13

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     RSLPDSNEV ++F  I I +V+  ++ L A NMFFI K K+ NQDV Y S K  R +P LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

AT4G11380.2 Adaptin family protein

6.2e-13

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     RSLPDSNEV ++F  I I +V+  ++ L A NMFFI K K+ NQDV Y S K  R +P LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

AT4G23460.1 Adaptin family protein

5.1e-15

54.05

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Query:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM
        RM R +     +SLPDSNEV ++F  I I +V+  +D LAA+NMFFI K K+ NQDV Y S K  RGIP LIE+
Subjt:  RMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEM

Sequences

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CDS sequence

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mRNA sequence

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ATGATAAAATTTCTATGCACATTTTCTTCGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGAC
CATTCTTATAAACAATGTTGACGGCATTGTCGACCGACTGGCTGCAACGAACATGTTCTTCATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAA
AATTCCTCAGAGGAATCCCTTTGTTGATTGAAATGCGCCATCAAAACTCCAAACATTGATATGGCTCCACTCCTCTTTGAAGCCTTAGAGACCCTTCTCAAGGAATGATC
CCAAGTGTGTGTTCTTCATATTCTTCTTTAACATTGTTTTTCTTTTTTCCCTCACCCTCTTAGGTCTGAGTAATCGATCATTCTCTGTTAATACATTAACATCAACTTAA
TAGAAAGATTAATTGTGCTAAGTATCGATTTTATACTTCCCAAACAATTGGCAATTGCCAAAGGCTTTCATTTAGAACTCGAGACATA

Protein sequence

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MIKFLCTFSSPRMGRWSVQTFSRSLPDSNEVSRDFSTILINNVDGIVDRLAATNMFFIVKTKHANQDVFYFSTKFLRGIPLLIEMRHQNSKH

CmoCh11G018830 (gene) of Cucurbita moschata (Rifu) v1 genome