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CmoCh12G000100 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G000100
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationCmo_Chr12:55850..56768
RNA-Seq ExpressionCmoCh12G000100
SyntenyCmoCh12G000100
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585161.1 ADP-ribosylation factor 2, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2993.42Show/hide
Query:  MVQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFGIHHASQMAALDCIVSVEGDGV
        MVQEVAENLILMHEECVDG+FSSIEMLSQS LPRVARSHVSQELLASPKEIEPF IHHASQMAALDCIVSVEGD +
Subjt:  MVQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFGIHHASQMAALDCIVSVEGDGV

KAG6591676.1 Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-0869.39Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKE
        ++EVAE LI+MHEEC+DGNFSSIE L QS LPRVARSHVSQ +    +E
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKE

XP_022936382.1 pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]2.5e-0869.39Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKE
        ++EVAE LI+MHEEC+DGNFSSIE L QS LPRVARSHVSQ +    +E
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKE

XP_022975934.1 pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]1.9e-0864.81Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFG
        ++EVAE LI+MHEEC+DGNFSSIE L QS LP+VARSHVSQ +    +E E  G
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFG

XP_023538379.1 uncharacterized protein LOC111799185 isoform X1 [Cucurbita pepo subsp. pepo]6.4e-1288.89Show/hide
Query:  VLLMVQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQ
        V+++++EVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQ
Subjt:  VLLMVQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQ

TrEMBL top hitse value%identityAlignment
A0A6J1F8A7 pre-rRNA-processing protein TSR2 homolog1.2e-0869.39Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKE
        ++EVAE LI+MHEEC+DGNFSSIE L QS LPRVARSHVSQ +    +E
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKE

A0A6J1FPH6 pre-rRNA-processing protein TSR2 homolog1.0e-0766.67Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIE
        ++EVAE LI MHEECVDGNFSSIE L QS LPR A SHVSQ +    +E E
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIE

A0A6J1GGX5 uncharacterized protein LOC1114541152.3e-0796.97Show/hide
Query:  MHEECVDGNFSSIEMLSQSSLPRVARSHVSQEL
        MHEECVDGNFSSIEMLSQSSLPRVARSHVSQ L
Subjt:  MHEECVDGNFSSIEMLSQSSLPRVARSHVSQEL

A0A6J1IM14 pre-rRNA-processing protein TSR2 homolog9.4e-0964.81Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFG
        ++EVAE LI+MHEEC+DGNFSSIE L QS LP+VARSHVSQ +    +E E  G
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFG

A0A6J1J400 pre-rRNA-processing protein TSR2 homolog6.7e-0764.71Show/hide
Query:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIE
        ++EVAE LI MHEECVDGNFSSI  L QS LPR A SHVSQ +    +E E
Subjt:  VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCTAATGGTGCAGGAGGTAGCTGAAAATTTGATTCTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAATGTTGAGCCAATCTTCTCTTCC
ACGAGTTGCTCGTTCTCATGTTAGTCAGGAACTATTGGCGTCTCCAAAGGAGATTGAACCTTTTGGTATCCATCACGCATCTCAAATGGCTGCTCTGGACTGCATTGTAT
CTGTTGAAGGCGATGGTGTTTATATCCTCATATACTGGAAACATGGCTACAACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTTCTAATGGTGCAGGAGGTAGCTGAAAATTTGATTCTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAATGTTGAGCCAATCTTCTCTTCC
ACGAGTTGCTCGTTCTCATGTTAGTCAGGAACTATTGGCGTCTCCAAAGGAGATTGAACCTTTTGGTATCCATCACGCATCTCAAATGGCTGCTCTGGACTGCATTGTAT
CTGTTGAAGGCGATGGTGTTTATATCCTCATATACTGGAAACATGGCTACAACAGTTGA
Protein sequenceShow/hide protein sequence
MVLLMVQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQELLASPKEIEPFGIHHASQMAALDCIVSVEGDGVYILIYWKHGYNS