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CmoCh12G000140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G000140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationCmo_Chr12:86065..87783
RNA-Seq ExpressionCmoCh12G000140
SyntenyCmoCh12G000140
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598222.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3268.81Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTKKRRTLGRFSAGLLELSYILVSQFVYLLII
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD +       F   +      L+S  ++ L  
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTKKRRTLGRFSAGLLELSYILVSQFVYLLII

Query:  RTQLFNLQV
         T   N  +
Subjt:  RTQLFNLQV

VAH65405.1 unnamed protein product [Triticum turgidum subsp. durum]3.2e-3283.95Show/hide
Query:  GTTRRPAQEATMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        G  +R    + MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL+K++T
Subjt:  GTTRRPAQEATMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]1.7e-33100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

XP_022961651.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata]6.4e-33100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

XP_023536875.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita pepo subsp. pepo]1.4e-3298.57Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

TrEMBL top hitse value%identityAlignment
A0A0A0LPW4 Uncharacterized protein8.1e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

A0A1S3C3L9 DNA-directed RNA polymerases I, II, and III subunit RPABC58.1e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

A0A6J1BRM3 DNA-directed RNA polymerases I, II, and III subunit RPABC58.1e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

A0A6J1GGE0 DNA-directed RNA polymerases I, II, and III subunit RPABC58.1e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC58.1e-34100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDT

SwissProt top hitse value%identityAlignment
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-2780.6Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.5e-3292.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-2780.6Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 101.5e-3292.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein5.1e-3391.3Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.0e-3392.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

AT1G61700.1 RNA polymerases N / 8 kDa subunit3.6e-3491.3Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAGGTTACCTGAAGAAGAAGTCAAGAAATACCTGTAGAAATATAAAGAGGGAGGAGGAGGAGGAGGAGGATGGGGAGGGTTTAACCGAGGAGGAAGAAACAGA
TGAAGAAGAAGAAGAAGATGAAGAATTCGTCGGAACGACCCGGAGACCAGCGCAGGAAGCGACAATGATCATCCCTGTGCGTTGCTTCACCTGCGGAAAGGTGATTGGAA
ACAAATGGGATCATTACCTCGATCTTCTACAGGCTGACTATTCCGAAGGGGATGCACTTGATGCACTGGGTTTGGTTCGTTACTGCTGTAGGCGAATGCTCATGACTCAT
GTTGACCTTATTGAGAAGCTTCTTAATTACAATACCCTGGATAAGTCTGATACCAAGAAAAGAAGAACTTTAGGAAGATTCAGTGCAGGACTACTCGAGTTAAGCTATAT
CTTGGTGTCCCAGTTTGTTTACTTGTTGATTATACGAACCCAACTATTTAATCTTCAAGTGTTTACTACTTTTAGGAGTTATTTATCAGAACCATGTACTTATCCATGTC
AAAATTTAGTCTTTAGAAATGTGTGGTTACTAGTTACTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAGGTTACCTGAAGAAGAAGTCAAGAAATACCTGTAGAAATATAAAGAGGGAGGAGGAGGAGGAGGAGGATGGGGAGGGTTTAACCGAGGAGGAAGAAACAGA
TGAAGAAGAAGAAGAAGATGAAGAATTCGTCGGAACGACCCGGAGACCAGCGCAGGAAGCGACAATGATCATCCCTGTGCGTTGCTTCACCTGCGGAAAGGTGATTGGAA
ACAAATGGGATCATTACCTCGATCTTCTACAGGCTGACTATTCCGAAGGGGATGCACTTGATGCACTGGGTTTGGTTCGTTACTGCTGTAGGCGAATGCTCATGACTCAT
GTTGACCTTATTGAGAAGCTTCTTAATTACAATACCCTGGATAAGTCTGATACCAAGAAAAGAAGAACTTTAGGAAGATTCAGTGCAGGACTACTCGAGTTAAGCTATAT
CTTGGTGTCCCAGTTTGTTTACTTGTTGATTATACGAACCCAACTATTTAATCTTCAAGTGTTTACTACTTTTAGGAGTTATTTATCAGAACCATGTACTTATCCATGTC
AAAATTTAGTCTTTAGAAATGTGTGGTTACTAGTTACTAGTTAG
Protein sequenceShow/hide protein sequence
MDRGYLKKKSRNTCRNIKREEEEEEDGEGLTEEEETDEEEEEDEEFVGTTRRPAQEATMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH
VDLIEKLLNYNTLDKSDTKKRRTLGRFSAGLLELSYILVSQFVYLLIIRTQLFNLQVFTTFRSYLSEPCTYPCQNLVFRNVWLLVTS