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CmoCh12G001300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G001300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncytochrome c oxidase subunit 6b-1-like
Genome locationCmo_Chr12:801986..804870
RNA-Seq ExpressionCmoCh12G001300
SyntenyCmoCh12G001300
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsIPR003213 - Cytochrome c oxidase, subunit VIb
IPR036549 - Cytochrome c oxidase, subunit VIb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585307.1 Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sororia]8.5e-6881.77Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE
        MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAA              DQE
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE

Query:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        SSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
Subjt:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

KAG7020225.1 Cytochrome c oxidase subunit 6b-1 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-7688.95Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE
        MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGA DEENSGDQE
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE

Query:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        SSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
Subjt:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

XP_022951612.1 cytochrome c oxidase subunit 6b-1-like [Cucurbita moschata]2.6e-7789.5Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE
        MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE

Query:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        SSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
Subjt:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

XP_023002728.1 cytochrome c oxidase subunit 6b-1-like [Cucurbita maxima]7.5e-7284.78Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS---AAAAEQESSGARDEENSG
        MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAA QGGDNTPVDENNEDAS   AAAAEQ SSGA +EENSG
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS---AAAAEQESSGARDEENSG

Query:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        +QESSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTFPGPL
Subjt:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

XP_023537220.1 cytochrome c oxidase subunit 6b-1-like [Cucurbita pepo subsp. pepo]6.1e-7486.89Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS--AAAAEQESSGARDEENSGD
        MAEAQSE APSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS  AAAAEQESSGA DEENSGD
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS--AAAAEQESSGARDEENSGD

Query:  QESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        QESSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTFPGPL
Subjt:  QESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

TrEMBL top hitse value%identityAlignment
A0A0A0LNV6 Uncharacterized protein8.4e-5364.47Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAA----------------AAE
        MAEAQS++ PSL+EQYSL++K EKVDI +PSEVKEVENSEN   PAEVVVKND+PPVEA  ADQ  D  P +E+N D+SAA                AAE
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAA----------------AAE

Query:  QESSGARDEENSGDQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        +ESSGA +EENSGDQES++E PEIKLETAP DF                   RC QAKGEGAPEC+KFAKYYRSLCP+EWVE+WNEQRENGTFPGPL
Subjt:  QESSGARDEENSGDQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

A0A6J1GI67 cytochrome c oxidase subunit 6b-1-like1.3e-7789.5Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE
        MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQE

Query:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        SSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
Subjt:  SSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

A0A6J1HH76 cytochrome c oxidase subunit 6b-1-like isoform X12.2e-5369.57Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQES---SGARDEENSG
        MAEAQSEK PSL+EQYSL++K EKVDI +PSEV+EVENSEN   PAEVVVKND+PPVEAD ADQG +N P D NN DASAAAA ++S   + A +EE SG
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQES---SGARDEENSG

Query:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        DQES++E PEIKLETAPADF                   RC QAKGEGAPECDKFAKYYRSLCP EWVE+WNEQRENG FPGPL
Subjt:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

A0A6J1KAZ5 cytochrome c oxidase subunit 6b-1-like isoform X12.6e-5469.57Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQES---SGARDEENSG
        MAEAQSEK PSL+EQYSL++K EKVDI +PSEVKEVENSEN   PAE+VVKND+PPVEAD AD+G +N P DENN DASAAAA ++S   + A +EE SG
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQES---SGARDEENSG

Query:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        DQES++E PEIKLETAPADF                   RC QAKGEGAPECDKFAKYYRSLCP+EWVE+WNEQRENG FPGPL
Subjt:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

A0A6J1KUF2 cytochrome c oxidase subunit 6b-1-like3.6e-7284.78Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS---AAAAEQESSGARDEENSG
        MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAA QGGDNTPVDENNEDAS   AAAAEQ SSGA +EENSG
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDAS---AAAAEQESSGARDEENSG

Query:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        +QESSNEAPEIKLETAPADF                   RCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTFPGPL
Subjt:  DQESSNEAPEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

SwissProt top hitse value%identityAlignment
O94581 Cytochrome c oxidase subunit 12, mitochondrial4.8e-1367.39Show/hide
Query:  FRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        FRCI+AKGE    C +F   Y+SLCP EWVERW+EQRENGTFP P+
Subjt:  FRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

Q1K8U2 Cytochrome c oxidase subunit 12, mitochondrial7.9e-0857.14Show/hide
Query:  RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFP
        +CI AKGE    C +F   YRSLCP+ W +RW+EQRE G FP
Subjt:  RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFP

Q945L0 Cytochrome c oxidase subunit 6b-22.5e-1754.67Show/hide
Query:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        EI+L+TAPADF                   RC  AKGE + +C++FAKYYR+LCP EWV++WNEQRE+GTFPGPL
Subjt:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

Q9S7L9 Cytochrome c oxidase subunit 6b-13.4e-2745.83Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVV----VKNDDPPVEA-DAADQGGDNTPVDENNEDASAAAAE---QESSGARD
        MA+A + + PSL+EQY LE +V++   A+P EVKEV  +  V   AE V     K + P  EA    ++  ++ P        + AAAE   +E+  A +
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVV----VKNDDPPVEA-DAADQGGDNTPVDENNEDASAAAAE---QESSGARD

Query:  EEN--SGDQESSNEAP-EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        E N  +  +E + E P EIKLETAPADF                   RC+ AKG+ APECDKFAK+YRSLCP+EWV+RWNEQRENGTFPGPL
Subjt:  EEN--SGDQESSNEAP-EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

Q9SUD3 Cytochrome c oxidase subunit 6b-34.9e-1857.33Show/hide
Query:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        EI+L+TAPADF                   RC  AKGE A EC++FAKYYR+LCP EWV++WNEQRE GTFPGPL
Subjt:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

Arabidopsis top hitse value%identityAlignment
AT1G22450.1 cytochrome C oxidase 6B2.4e-2845.83Show/hide
Query:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVV----VKNDDPPVEA-DAADQGGDNTPVDENNEDASAAAAE---QESSGARD
        MA+A + + PSL+EQY LE +V++   A+P EVKEV  +  V   AE V     K + P  EA    ++  ++ P        + AAAE   +E+  A +
Subjt:  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVV----VKNDDPPVEA-DAADQGGDNTPVDENNEDASAAAAE---QESSGARD

Query:  EEN--SGDQESSNEAP-EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        E N  +  +E + E P EIKLETAPADF                   RC+ AKG+ APECDKFAK+YRSLCP+EWV+RWNEQRENGTFPGPL
Subjt:  EEN--SGDQESSNEAP-EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein3.5e-1957.33Show/hide
Query:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        EI+L+TAPADF                   RC  AKGE A EC++FAKYYR+LCP EWV++WNEQRE GTFPGPL
Subjt:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL

AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein1.7e-1854.67Show/hide
Query:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL
        EI+L+TAPADF                   RC  AKGE + +C++FAKYYR+LCP EWV++WNEQRE+GTFPGPL
Subjt:  EIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGCAATATTCATTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTGAAAGAGGTAGA
GAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTGAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCTGATCAAGGCGGTGACAACACTCCTGTCGATGAAA
ACAATGAAGATGCATCGGCAGCTGCTGCTGAGCAAGAAAGCAGCGGAGCCAGAGACGAGGAAAATTCTGGTGATCAAGAAAGCAGCAATGAGGCACCTGAGATTAAGCTT
GAAACAGCTCCAGCAGATTTCCGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAACTGAATGGGTAGA
GAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCACTGTAG
mRNA sequenceShow/hide mRNA sequence
GTTAGAGTTTCTTCCTCCTTCGTTTGCCCTTCCTGCTGCCGCCTCTGTTGTCCAATCGTTGCGTTTCTAGCTGCAACTGGAGCGGATCGCTTCTTCTTCTTTCATCCATG
GCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGCAATATTCATTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTGAAAGAGGTAGAGAA
CTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTGAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCTGATCAAGGCGGTGACAACACTCCTGTCGATGAAAACA
ATGAAGATGCATCGGCAGCTGCTGCTGAGCAAGAAAGCAGCGGAGCCAGAGACGAGGAAAATTCTGGTGATCAAGAAAGCAGCAATGAGGCACCTGAGATTAAGCTTGAA
ACAGCTCCAGCAGATTTCCGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAACTGAATGGGTAGAGAG
GTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCACTGTAGGAGTTAAGCCACACGCTGCCCTTAAATTCCAAATAAACTATCTCCTCAAACAATTGAGTTCATA
ATTTCCGGCTGGTTTTTGGTCTTTTATTCAAAATCCAATTTCAGCCAAGTTTGTTGATGCGACTATCCCCTGTTTCTTCAATGATTATGTTCCAATCCAATAAGACAATG
AAGAAATTTGATCTCTTTTTTCTCATTGCATACTTTTGACGATCATGAATGAAGAAATTTAAAGATCAAACTCAATTTGATTGGAAGAATCGATGAACTACGCATTTGAA
CTTCAC
Protein sequenceShow/hide protein sequence
MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEAPEIKL
ETAPADFRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL