; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G001560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G001560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationCmo_Chr12:1016996..1020368
RNA-Seq ExpressionCmoCh12G001560
SyntenyCmoCh12G001560
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585342.1 hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia]8.1e-9399.41Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGF SDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
XP_008444920.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo]2.1e-8591.81Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]2.1e-93100Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]4.7e-9399.41Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]1.6e-8592.4Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881211.0e-8591.81Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X21.1e-8490Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        WSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA GNINDSFSA+SKKYMEQWLSSLQ+C
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1GID2 uncharacterized protein LOC1114544871.0e-93100Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1K730 uncharacterized protein LOC111492231 isoform X23.2e-7986.55Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW  SGKHKEP++SN GSA NASLDT  RE DTLKF L NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        GWSEPHGPGFQSDD++DNSFAVLVPCY R+YNDFVDETK S+LSA GNI+DSFS ESKKYMEQWLSSLQ+C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
A0A6J1KME1 uncharacterized protein LOC1114959312.3e-9399.41Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein4.1e-1051.47Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNI
        SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N +LSA  N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNI
AT4G38060.2 unknown protein2.2e-1652.27Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQ
        SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N +LSA  N+ +    + K YMEQWLSSLQ
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQ
AT5G65480.1 unknown protein3.8e-1633.53Show/hide
Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+V+FP+L  W   G + + R    S    S       P   K   +   + SSS ++ +R W  R       E D +      G V   E DD +WSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSL
        W EPHGPGF+++D+    F VLVP Y +V +   ++  N   S         +A   K MEQWLSS+
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATGGATCCGCTTTTAACGCTTCACTAGATACAGTCATTCG
GGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTGAGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGG
AATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAG
AGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTTCTGGGAA
CATCAACGATAGCTTTTCTGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGCTGCTGA
mRNA sequenceShow/hide mRNA sequence
AAAAGCGTTTCATCTTTAACTTCTTCAATTTTGACGATCAGTTGGCTGAAATTTTCGGTGTTCAATTTGAATTCGTCGGCCTCTGAATCGTCCATTTGCAGAAGACCGTA
GCCATCGGAGGTTTTGCTTTGAGGTTTGTTCGTTAAGGAAAAAAAACTGCTCCATTTCACAACCCTGGCCTTGGAATCTACCTGTAATTAGCGTGTTTTTCATTGGAGAG
ACTTGTTATTCATTAGTAAAGAAAATTGAATTCACACATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATG
GATCCGCTTTTAACGCTTCACTAGATACAGTCATTCGGGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTGAGGCGG
AAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTC
AATTGGATGGTCAGAACCCCATGGACCTGGATTCCAGAGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGG
ATGAAACAAAGAACAGTATCCTAAGTGCTTCTGGGAACATCAACGATAGCTTTTCTGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGCTGCTGA
TGCACAGGGTTTATAATTGCTGTACGCATCGGATGTTAATGCCCTGTTCCAAGAAGAAAGAGCATTCTGTGATCTTTAGCTATTCAAAAATTACAAAAATATGGAAAAAA
AAGAAAAAGAAAAAAGATTGTAAAAGTCTATCTATTCTGGCTTCGTTTGATATACAACTAAGAAGCAAATTGGATGAGAAGATTGGATCCATTGATTCCAATCAGTGGGT
GCAGGTTGTGCAGGTCGAATCTTTTCCATTCCTTTGAGCATGCTCTTAAGAAGAGTGATGTGGGATGAAGCTTGTGAAAATGGGATGTAAATACTTCGAGACTCCTTTGT
AAATATGGAAGGGAGAAAGGAGGAAAGGGTTGAGCCAAGCAGCCAAGGTTTGGAGAAAAAGAGCATTAAAAAAGAGGTGGAAGTGAGTGGAGGTATGGTGTAATTCTTTG
AAGTTCAGTTCATGTATAAAGTGGGAAGTCTTTAACTTTAATTGATCTGAACGTTGCTGTAAATAGTGACTCATTTGTGTGTATGCATTGTGTGATCTGAGTGCGTTTGG
TTCATTTAAACGTCGCTGTATATGGTGACCTCATTTGTAAAATTTGTTGCACATAGTAACACAGTTAATCTCTCCCTATTCAATGTAATATTCTTTATATATATATACAT
ACACCTTCGTTGTGAAGTGTGAATATTTGACCTC
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC