CuGenDBv2

Gene ID	CmoCh12G001580
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	TPR_REGION domain-containing protein
Genome location	Cmo_Chr12:1028329..1028964
RNA-Seq Expression	CmoCh12G001580
Synteny	CmoCh12G001580
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7020255.1 hypothetical protein SDJN02_16938, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-100

99.53

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGF+TSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_022951869.1 uncharacterized protein LOC111454602 [Cucurbita moschata]

2.9e-100

100

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_023002879.1 uncharacterized protein LOC111496615 [Cucurbita maxima]

4.2e-99

98.58

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRR VVDSA+ADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLS+S
Subjt:  AREALERLSSS

XP_023537835.1 uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo]

1.1e-99

99.53

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRR VVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

XP_038884950.1 uncharacterized protein LOC120075535 [Benincasa hispida]

2.9e-92

92.89

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQI LILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPL AKSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE+KKLRGEAKKAYEEALNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPL8 TPR_REGION domain-containing protein

1.0e-90

91.94

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD 
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPL AKSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE KKLR EAKKAYEEALNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A1S3BC86 uncharacterized protein LOC103488119

7.0e-92

92.42

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD+
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPL AKSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYEMKKLR EAKKAYEEALNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A5A7VBU3 TPR domain protein

7.0e-92

92.42

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSAPSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD+
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPL AKSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYEMKKLR EAKKAYEEALNIEPRLS 
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A6J1GK03 uncharacterized protein LOC111454602

1.4e-100

100

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Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLSSS
Subjt:  AREALERLSSS

A0A6J1KRQ5 uncharacterized protein LOC111496615

2.0e-99

98.58

Show/hide

Query:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
        MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI
Subjt:  MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDI

Query:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
        QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRR VVDSA+ADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK
Subjt:  QGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSK

Query:  AREALERLSSS
        AREALERLS+S
Subjt:  AREALERLSSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G65520.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.3e-34

44.39

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Query:  DILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGF
        + ++Q A++++ +VMF A+  + QR   K R + R+ ++++R  ++ ++LLARAR+ P +S + SLA+  + EAD  IA+ P DAA HI++ALALD+ G 
Subjt:  DILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGF

Query:  KTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTL---SQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEP
         TSAL+S D AL+    KSLS  ER DAL KRAE+K++ NRR  +DSA+ DL E+V L   +  A  +  LG+CYE K L+ +A+ A+ EAL  +P
Subjt:  KTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTL---SQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTT
CGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCT
GAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAAGACC
TCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATG
TCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTAT
GAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCA
TCGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKT
SALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSKAREALERLSS
S

CmoCh12G001580 (gene) of Cucurbita moschata (Rifu) v1 genome